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Physiological Reviews, Vol. 81, No. 2, April 2001, pp. 569-628
Copyright ©2001 by the American Physiological Society
Danish Centre for Respiratory Adaptation, Department of Zoophysiology, Institute of Biology, University of Aarhus, Aarhus, Denmark; and Department of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, Michigan
I. INTRODUCTION
A. Distribution and Location of Nonvertebrate Hemoglobins
B. The Mb Fold is Common to All Hbs
C. Variation in Structure and Function
D. Existing Reviews and Scope
II. BIOLOGICAL ROLE
A. Organismic Significance
B. Environmental and Endogenous Constraints on Hb Function
C. Intrinsic Structural and Functional Characteristics
III. OCCURRENCE AND FUNCTIONAL AND MOLECULAR PROPERTIES
A. Cytoplasmic Hbs and Mbs
B. RBC Hbs
C. Extracellular Hbs
IV. INTRA- AND INTERSITE FUNCTIONAL DIFFERENTIATION
A. Role of Hb Heterogeneity
B. O2 Transfer Systems
V. OTHER FUNCTIONS, REACTIONS, AND ACTIVITIES
A. Acid-Base Balance
B. Reactions With Sulfide
C. Autoxidation and Hemichrome Formation
D. Minor Activities and Specialized Functions
VI. CONCLUDING REMARKS
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ABSTRACT |
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Weber, Roy E. and
Serge N. Vinogradov.
Nonvertebrate Hemoglobins: Functions and Molecular
Adaptations. Physiol. Rev. 81: 569-628, 2001.
Hemoglobin (Hb) occurs in all the
kingdoms of living organisms. Its distribution is episodic among the
nonvertebrate groups in contrast to vertebrates. Nonvertebrate Hbs
range from single-chain globins found in bacteria, algae, protozoa,
and plants to large, multisubunit, multidomain Hbs found in nematodes,
molluscs and crustaceans, and the giant annelid and vestimentiferan Hbs
comprised of globin and nonglobin subunits. Chimeric hemoglobins have
been found recently in bacteria and fungi. Hb occurs intracellularly in
specific tissues and in circulating red blood cells (RBCs) and freely
dissolved in various body fluids. In addition to transporting and
storing O2 and facilitating its diffusion, several novel Hb functions have emerged, including control of nitric oxide (NO) levels
in microorganisms, use of NO to control the level of O2 in
nematodes, binding and transport of sulfide in
endosymbiont-harboring species and protection against sulfide,
scavenging of O2 in symbiotic leguminous plants, O2
sensing in bacteria and archaebacteria, and dehaloperoxidase
activity useful in detoxification of chlorinated materials. This review
focuses on the extensive variation in the functional properties of
nonvertebrate Hbs, their O2 binding affinities, their
homotropic interactions (cooperativity), and the sensitivities of these
parameters to temperature and heterotropic effectors such as protons
and cations. Whenever possible, it attempts to relate the ligand
binding properties to the known molecular structures. The divergent and
convergent evolutionary trends evident in the structures and functions
of nonvertebrate Hbs appear to be adaptive in extending the inhabitable
environment available to Hb-containing organisms.
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I. INTRODUCTION |
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A. Distribution and Location of Nonvertebrate Hemoglobins
Hemoglobin (Hb) is encountered in all five kingdoms of organisms. In the animal kingdom, apart from vertebrates, Hb occurs widely but sporadically in the phyla Platyhelminthes, Nemertea, Nematoda, Annelida, Vestimentifera, Pogonophora, Echiura, Phoronida, Arthropoda, Mollusca, Echinodermata, and Chordata and is found in some 33% of the presently known animal classes (351, 542, 578). Over the last dozen years, single-chain globins have been found in nonleguminous plants, algae, and a number of prokaryotes, ranging from bacteria to cyanobacteria. Chimeric Hbs comprised of an NH2-terminal globin domain linked covalently to a flavoprotein have been found in bacteria and yeast. Very recently, an aerotaxis transducer in a bacterium and an archean was shown to have an NH2-terminal globin domain (240).
Nonvertebrate Hbs ranging from monomers to giant multisubunit structures occur in widely different anatomical sites, either in the cytoplasm of specific tissues (muscle, nerve and glial cells, gametes, etc.) or red blood cells (RBCs) or freely dissolved in vascular, coelomic, or perienteric body fluids. In this review Hb refers to all classes of O2 binding heme proteins ranging in size from single one-domain globins to the most complex ones, and myoglobin (Mb) is used nonexclusively to denote generally single one-domain Hbs occurring in muscle, nerve/glial, and other tissues as well as those found in unicellular organisms, including the IDO-like Mbs of abalone molluscs (525). Additionally, single one-domain globins occurring in symbiont-containing leguminous plants, in nerve tissue, and in cyanobacteria are denoted LegHbs, neuroglobins, and cyanoglobins, respectively. The term erythrocruorin used in the older literature for all extracellular Hbs and some cytoplasmic invertebrate Hbs is no longer employed. Chlorocruorin (Chl) refers to a subgroup of hexagonal bilayer (HBL) Hbs that are greenish red as the result of a modified heme group and occur in four marine annelid families (see sect. IIIC3). Chimeric Hbs comprised of covalently linked globin and flavoprotein domains and found in bacteria and yeasts (see sect. IIIA1) are named flavoHbs (FHbs).
B. The Mb Fold is Common to All Hbs
Crystals of all the known vertebrate and nonvertebrate Hbs and Mbs
exhibit a tertiary structure (the Mb fold) that consists of six to
eight
-helical segments connected by short loops (50, 343). This structure forms a three-on-three helical
sandwich able to bind heme with high affinity within a cavity
lined by hydrophobic residues. The amino acid sequences of
nonvertebrate Hbs and Mbs, now more than 170, including the sequences
of all the known globin chains comprising the large and more
complicated invertebrate Hbs whose crystal structures are not known,
can be aligned quite reliably with the over 600 sequences of vertebrate Hbs and Mbs using the known crystal structures, mostly of monomeric globins (36, 289, 343,
394). Although the percent of amino acid identity varies
widely and can be almost random, two features are conserved: the
invariant residues, Phe and His at positions CD1 and F8, respectively,
and the characteristic patterns of hydrophobic residues in each of the
-helical segments. The remarkable conservation of the Mb fold is
consonant with the globin family having one of the highest conservation
of residue-residue contacts among known protein families
(82, 457). Phylogenetic trees based on the
known sequences point to a common and quite ancient globin ancestor for
all the known present-day globins (205,
394), possibly a primitive archebacterium that developed
3,500 million years ago (20).
C. Variation in Structure and Function
Compared with the intensively studied vertebrate monomeric (17 kDa) Mb and tetrameric (64 kDa) Hb, nonvertebrate Hbs exhibit much broader variation in their primary and quaternary structures. Although nonvertebrates are phylogenetically more primitive than vertebrates, the high variability encountered in their Hbs reflects specialization and adaptation to a greater range of operating conditions than in vertebrates (630). However, compared with the vertebrate Hbs, much less is known about the relations between their physiological functions and their molecular structures at the atomic level.
The as yet incompletely investigated array of quaternary structures can be broadly subdivided into several distinct groups (618) (Fig. 1). 1) The monomeric, 17 kDa, one-domain, single-chain Hbs and Mbs, which can be intracellular (tissue or cytoplasmic or located within RBCs) or extracellular, form the largest group of nonvertebrate globins. In addition to the widely occurring muscle Mbs of molluscs, annelids, and nematodes and the monomeric Hbs in annelid RBCs, this group includes the "truncated" globins, which have some 30-40 fewer residues than normal globin chains. The latter comprise the 109-amino acid residue neuroglobin of a nemertean (602), the 116- to 121-residue protozoans Hbs (533), and the 118-residue bacterial cyanoglobin (438). 2) The second group contains dimers of bacterial Hbs (621), dimers and tetramers of intracellular RBC globins, such as the Hbs of the clam Scapharca (466), and higher complexes of single-chain globins, such as the polymeric intracellular Hb of Glycera (612). 3) The third group comprises large multisubunit Hbs with masses ranging from 200 to 800 kDa, comprised of two-domain globin subunits (~35 kDa), found in arthropods (251) and nematodes (44). 4) The fourth group contains multisubunit, multidomain Hbs, consisting of one or more chains of 4-20 covalently linked globin domains, encompassing the ~250-kDa Hb of brine shrimps (363), the 1,700- to 2,300-kDa snail Hbs (53), the largest known, polymeric Hbs (>8,000 kDa) found in clams (563), and the 124- and 153-kDa Hbs found in the hydrothermal vent polychaete Branchipolynoe (243). 5) The fifth group is the giant extracellular HBL Hbs (~3,600 kDa) of annelids and vestimentiferans comprised of 180-192 polypeptide chains of which about one-third are nonglobin linker proteins (339). In addition to a wide variation in molecular size, nonvertebrate Hbs exhibit a broad spectrum of O2 binding properties. Their O2 affinities that may be dependent or independent of pH (due to the presence or absence, respectively, of Bohr effects) cover over five orders of magnitude, and cooperativity coefficients vary over a ~10-fold range (Table 2).
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Although the physiological functions of vertebrate Hb are the transport of molecular O2 and a role in nitric oxide (NO) metabolism, those of nonvertebrate Hbs are much more diverse. In addition to O2 transport (see sect. IIC3) and storage (see sect. IIC4), they include facilitation of O2 diffusion (see sect. IIC5), reactions with sulfide and its transport (see sect. VB), complex and as yet incompletely elucidated roles in NO regulation and metabolism (see sect. IIIA1), maintenance of acid-base balance (see sect. VA), O2 scavenging (see sect. IIIA2), O2 sensing (see sect. VD5), oxidase and peroxidase activities, the latter related to detoxification (see sect. VD1), vitellogenin-like function (see sect. VD3) and roles as light-shading pigments (see sect. IIIA4) and regulators of the buoyancy of aquatic insects (see sect. VD4). A salient characteristic of invertebrate Hbs is heterogeneity in molecular and functional properties, which can be extensive and which is likely to be beneficial to the organism (see sect. IVA). The two best-characterized cases are the extracellular larval Hbs of the insect Chironomus (see sect. IIIC1) and the intracellular Hbs of the bloodworm Glycera (see sect. IIIB3). Hbs with different O2 binding properties may also occur in different sites providing a basis for intersite O2 transfer (see sect. IV). The diversity in function of cytoplasmic Hbs has been surveyed in a unique review by J. Wittenberg (664).
D. Existing Reviews and Scope
Numerous reviews of specific groups of nonvertebrate Hbs and Mbs have appeared over the last three decades: Hbs in parasites (342), extracellular Hbs (13, 94, 351, 541, 609, 629), bacterial Hbs (434a, 647), crustacean Hbs (353), mollusc Hbs (53, 396, 445, 558), intracellular Hbs (351, 355, 463, 546, 558, 577, 629), symbiotic and nonsymbiotic plant Hbs (17, 18, 20, 21, 30, 167, 232), nematode Hbs (44) including Ascaris Hb (198, 199), Hbs in unicellular organisms (490, 533), cytoplasmic Hbs and Mbs (445, 664, 666, 668), Hbs of eukaryote/prokaryote symbioses (317a, 663, 666), extracellular Hbs (208, 342, 450, 451, 550, 578, 609, 618, 651) and Mbs (520). The respiratory functions of invertebrate Hbs have also been reviewed repeatedly (351, 353, 355, 356, 424a, 542, 550, 629, 630). The current knowledge of the crystallographic structures of the predominantly small nonvertebrate Mbs and Hbs has been reviewed by Bolognesi et al. (50).
In contrast to reviews on separate groups and types of nonvertebrate Hbs, we have attempted to provide here a comprehensive overview of their functional properties, structures, and adaptations and to identify the major adaptational and evolutionary strategies.
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II. BIOLOGICAL ROLE |
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A. Organismic Significance
Although specific Hbs may be specialized for a particular function, a strict division between the roles in transporting O2, storing O2, and facilitating its diffusion is not feasible. In transporting O2, Hb bridges wide and independent variations in O2 tensions at the sites of O2 loading and unloading, particularly in nonvertebrates subjected to highly variant ambient conditions. Although the O2-transporting role of circulating Hbs can be readily established in larger organisms (from differences in O2 saturations between the pre- and postbranchial/pulmonary circulations), doubt about their functional significance is provoked by the lack of correlation between its presence and the hypoxic/anaerobic tolerances in different species. However, apparent superfluousness under a given set of conditions does not exclude a vital role under another more stressful one (630). Furthermore, a capacity to live under anaerobic conditions does not exclude reliance on Hb, which "can function in O2 transport only in the presence of O2, not in its absence" (356). Several examples of the organismic role of Hb are described below.
The induction of Hb synthesis in many invertebrates under stressful conditions (hypoxia, temperature increase and CO poisoning) (59, 162, 307) attests to its role, as do inter- and intraspecific comparisons of animals with and without Hbs. Thus the mud-dwelling nematode Enoplus brevis that has pharyngeal Hb maintains higher feeding rates under hypoxia than the related, Hb-free E. communis (34). Analogously, CO blockade of Hb function drastically reduces filter-feeding in Hb-rich Chironomus plumosus larvae, but hardly affects that in Hb-poor Endochironomus albipennis specimens (623) and Hb-rich specimens of C. plumosus larvae survive progressive hypoxia longer than Hb-poor ones (624). Similarly, the Hb-bearing pulmonate snail Planorbis corneus shows greater diving potential, lower postdiving pulmonary O2 tensions, and a greater exploitation of the pulmonary O2 store than Hb-free Lymnaea stagnalis (274). At the tissue level, the biological significance of Hb is evident from a much longer duration of neural activity under anoxia (absence of free O2) in cerebrovisceral tissues of the Hb-containing bivalve Tellina alternata than in the Hb-free tissues of Tagelus plebeius (144, 319). The biological advantages of hypoxia-induced increases in Hb concentration in the crustacean Daphia are discussed in section IIIC7A.
Another illustration is the reduction in O2 consumption rates following "CO poisoning" that blocks O2 binding without inhibiting mitochondrial function. Figure 2 illustrates the contribution of Hbs to aerobic metabolism. In the case of the coelomic RBC Hb of the polychaete Enoplobranchus sanguineus and the extracellular Hb of C. plumosus, which burrow in marine and freshwater sediments, respectively, the contribution increases with decreasing ambient O2 tension. In contrast, the contribution of the coelomic Hb in the clam Noetia increases with increasing tension, while that of the extracellular Hb of Arenicola marina is greatest at intermediate (50-100 Torr) tensions. The role of O2-transporting proteins may vary with endogenous factors. In the polychaete Sabella melanostigma, blocking Chl function by NaNO2 showed that the role of the Chl increases with body weight (292).
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CO-poisoning experiments require high values of the partition coefficient M (the ratio of CO to O2 affinities), which is markedly dependent on the species (351, 630). Hb structure imposes restrictions on CO binding. Compared with M values of 200-250 and 20-50 characterizing mammalian Hbs and mammalian Mbs, respectively (12), the partition coefficient M varies widely in nonvertebrates, from 0.08 in perienteric Hb of Ascaris to ~20,000 in Glycera intracellular Hb (Table 1). Generally, the M values are low (2-50) in RBC and extracellular Hbs and even lower (<1) in cytoplasmic Hbs. The extremely high value (~20,000) found for the monomeric Hb of Glycera dibranchiata is a consequence of a correspondingly high CO-binding affinity (480). Analogously, the extremely low value for perienteric Ascaris Hb (191) tallies with its exceptionally high O2 affinity, and the high M value for Branchiomma Chl (~540) (160) matches the very low O2-binding affinities of Chls.1
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B. Environmental and Endogenous Constraints on Hb Function
1. Oxygen
The low capacities of nonvertebrates for regulating their
"milieú intérieur" imply that the operating conditions
of their Hbs vary markedly in parallel with ambient conditions,
particularly in internal parasites and in aquatic and burrowing species
that routinely are subjected to anoxia, hypoxia (O2
shortage), or hyperoxia (O2 tensions exceeding atmospheric
levels resulting from plant photosynthetic activity). Nematodes from
vertebrate intestines face O2 tensions from zero in the
lumen to 18-30 Torr at the mucosa (459). Higher tensions
may prevail for Strongylus spp. that are embedded between
crypts of richly vascularized duodenal villi supplied by
O2-rich portal circulation, while the tracheal parasites like Syngamus trachea will experience near-atmospheric
tensions (121, 460a). On the other hand, the
larvae of the insect Gastrophilus intestinalis face
intermittent deficiency in O2 within the semi-fluid contents of horse stomachs (294). Internal O2 tensions PiO2, however,
depend not only on external values PeO2 but
also on cuticular O2 diffusion conductances (GT), as evident from profound differences
between the ambient O2 tensions at which Hb transports
O2 in vivo (from CO-poisoning experiments; see sect.
IIIA) and the O2 tensions that
half-saturate Hb in vitro (P50 values). Given that
O2 uptake rate (MO2) equals GT(PeO2 2. Salinity and pH
Variations in salinity and pH in time and space may exert
mandatory effects on Hb function in euryhaline invertebrates living in
widely different salinities and lacking significant osmotic, ionic, and
acid-base regulatory capacities. The in vivo body fluid pH values
in polychaetes and other invertebrates studied range from 6.84 to 7.44 (360, 648) and predictably show greater
variation under unfavorable conditions. 3. Sulfides and carbon monoxide
These compounds may block aerobic metabolism as well as Hb
O2 binding and their effects may compound the impact of
other environmental stresses, as in the polychaete Arenicola
marina and clam Astarte borealis from marine sediments,
where hypoxia increases sulfide-induced Hb autoxidation and the
simultaneous liberation of hydrogen peroxide (1).
Sulfide-rich habitats range from inter- and subtidal muds to
deep-sea cold seeps, seagrass beds, sewage outfalls, and
deep-sea hydrothermal vents. Bivalves, vestimentiferans, and
annelids like Alvinella pompejana from "white smoker"
hydrothermal vents, encounter high concentrations of HS 4. CO2
Variations in CO2 tension may affect the O2
binding properties through reversible CO2 binding to
the Hb (as carbamino compounds), or indirectly through pH changes that
affect the O2 binding affinity of the Hb (the Bohr effect).
Compared with air breathers that are in a state of "compensated
hypercapnic acidosis," i.e., a state where CO2-induced pH
decreases are compensated by high bicarbonate levels
(133), aquatic species generally have low internal
PCO2 values due to the high CO2
solubility in water. However, hypercapnia may occur in some aquatic
forms, such as the gutless, deep-sea hydrothermal vent tube worm
Riftia pachyptila which uses symbiotic chemoautolithotrophic
bacteria for carbon fixing and is periodically exposed to
CO2 and sulfide-rich vent water, in which high internal PCO2 values (up to 45 Torr) are associated with
large base excesses in the coelomic and vascular fluids
(580). 5. Temperature
The decrease in O2 affinity with rising temperature
mandated by the exothermic nature of heme oxygenation (
PiO2) (229), O2
transport by circulating Hbs is favored by ventilation and perfusion of
the respiratory surfaces (gills, lungs, and skin).
(up to 1 mM) as well as relatively high CO concentrations
(148, 345, 544). The
CO/O2 partition coefficient M in Hbs from these animals appears not to have been measured. Many invertebrate groups living in sulfide-rich environments harbor symbiont
chemoautotrophic bacteria that oxidize sulfide and fix CO2.
The Hbs of these organisms bind sulfide without covalent modification
of the heme groups (unlike mammalian Mb and Hb) and may play a role in
transporting sulfide or facilitating its diffusion and in protecting
the tissues from sulfide poisoning (see sect.
VB).
H
~
50 kJ/mol O2) may jeopardize O2 loading to
Hb in ectothermic invertebrates (whose body temperature coincides with
that of the environment) under hypoxic conditions and rising
temperature. The temperature effect is, however, reduced by endothermic
processes, including oxygenation-linked dissociation of Bohr
protons and other ions (646, 674). The Hb of
the intertidal polychaete (lugworm) Arenicola marina, which
functions under larger temperature variations than the Hb of the
subtidal lugworm, Abarenicola claparedii, has a larger Bohr
effect (
=
0.9 and
0.3, respectively) and a lower temperature effect (
H =
22 and
66 kJ/mol,
respectively) (627). Extreme thermal gradients occur in
the deep-sea hydrothermal vent habitats resulting from random
mixing of O2-rich, cold (2°C) deep-sea and extremely
hot (up to 320°C) anoxic vent waters (581). The hydrothermal vent polychaete Alvinella pompejana holds the
record as the most thermotolerant known metazoan: in situ measurements of ambient temperature provided a mean of 68°C with spikes to 81°C
(76). In this species, a high temperature sensitivity of O2 affinity (
H =
76 kJ/mol at pH 6.9)
(Table 2,
extracellular Hbs) appears compensated by
an exceptionally high intrinsic O2 affinity
(P50 = 0.3 Torr at 20°C) (581). Large
thermal variations are also encountered by Hb-containing
prokaryotes like the cyanobacterium Nostoc that extends from
tropical to polar terrestrial environments (569).
Table 2.
Representative O2 binding properties
C. Intrinsic Structural and Functional Characteristics
1. Molecular transitions
Hbs exhibit homotropic interactions (cooperativity between
O2 binding heme groups that causes the sigmoidal shape of
the O2 binding equilibrium curves and increase the
O2 turnover for a given change in
PO2) and heterotropic ones, like the Bohr
effect (inhibitory interactions between proton binding sites and hemes
that decrease O2 affinity with falling pH and enhance
O2 unloading from Hb at the relatively acid pH in tissues).
Tetrameric vertebrate Hbs, which accurately fine-tune
O2 transport to tissues through thermodynamic linkages
between heme oxygenation and binding of a range of allosteric ligands,
form a convenient reference point for reviewing structure-function relationships in nonvertebrate Hbs. The deoxygenated molecules occur in
a low-affinity tense (T) conformation, constrained by intersubunit
bonds that are disrupted upon oxygenation as the molecules shift to the
high-affinity relaxed (R), oxygenated state. This shift is the
basis for cooperativity and is reflected in the displacement between
the lower and upper asymptotes of extended Hill plots (see sect.
IIIC3D). In vertebrate Hbs,
cooperativity requires the presence of two kinds of subunits associated
as a tetramer (39), and the quaternary structural shift
involves a 12-15° rotation of the
Although lacking quaternary transitions, some monomeric
invertebrate Hbs show pronounced Bohr effects based on
protonation-linked T In mammalian Hbs, the "fixed-acid" Bohr effect resulting from
proton binding is supplemented by a CO2 Bohr effect
attributable to oxygenation-linked binding of CO2 at
uncharged Oxygenation-linked dissociation, first described in lamprey Hb
(62), represents the simplest forms of homo- and
heterotropic interactions. The cooperativity (decrease in affinity with
falling O2 saturation) of this Hb and the effect of pH on
its affinity is determined by an equilibrium between low-affinity
oligomers and a high-affinity monomer. Because proton binding
stabilizes the aggregate, the Bohr effect represents a cooperative
uptake of protons upon deoxygenation. A structural basis for the
dimerization and the Bohr effect was recently provided by the
crystal structure of lamprey deoxyHb determined by Heaslet and Royer
(227). Oxygenation-linked dissociation has been
inferred to occur in nonvertebrate Hbs exhibiting oligomerization,
including cytoplasmic Hbs from the nemertean Cerebratulus
(602), neuroHb of the bivalve Tellina
(319), tracheal cell Hbs from the insect
Anisops (652), and RBC Hbs of the sea cucumber Molpadia arenicola (454), the
polychaete Glycera dibranchiata (391) and the
bivalve A. broughtonii (171). The state of
oligomerization of the larval Gastrophilus Hb remains
unclear (56). 2. The heme cavity and ligand binding kinetics
Because the O2 binding affinity is determined by the
ratio of the O2 association and dissociation rates
(kon and koff,
respectively), its variation can be due to alterations in only one or
both rates. Table 3 shows the
O2 association and dissociation rates of a number of
nonvertebrate Hbs and Mbs, compared with sperm whale Mb. The ligand
binding kinetics of nonvertebrate Hbs are strongly influenced by the
structure of the heme cavity, particularly the size and polarity of
residues occupying the distal portion that exert steric and dielectric
effects (50, 508).
1
1-dimer relative to the
2
2-dimer, while the
1
1- and
2
2-contacts in the tetramer remain rigid (427). In vertebrate Hbs, proton binding responsible for
the normal ("alkaline") Bohr effect occurs mainly at the
NH2-terminal amino acid residues of the
-chains and the
COOH-terminal histidines of the
-chains (428,
449, 646), whereas
143(H21)His appears to
be implicated in the reverse "acid" Bohr effect (increase in affinity with falling pH seen at low pH). Hb-O2 affinity is
moreover decreased by chloride and by anionic organic phosphates that
bind stereochemically at specific cationic residues at the entrance to
the central cavity between the two
-chains of
deoxyHb.2 Accordingly,
structural mutations that strengthen the T state or favor effector
binding decrease O2 affinity, and those that favor the R
state increase affinity. In vertebrates as well as invertebrates,
hyperventilation that promotes excretion of CO2 and other
acidic wastes raises O2 affinity of Hbs with a normal Bohr
effect. In mammalian and lower vertebrate Hbs (592,
639), increasing proton and organic phosphate levels lower
O2 affinity by decreasing the O2 association
constant of the T state (KT) without
significantly affecting that of the R state
(KR).
R transitions. Thus conformation-linked
proton dissociation and association, respectively, underlie the normal
(alkaline) Bohr effect of the larval Hbs III and IV of the insect
Chironomus (496, 637) and the
pronounced, reverse (acid) Bohr effect (
= +0.8) in the Hb
of the parasitic fluke from sheep liver Dicrocoelium dendriticum (500). Analogously, pH-linked
conformational changes (138, 482) appear to
be responsible for the pH and lactate effect in monomeric vertebrate
Mbs (185), and tertiary level fluctuating T states may
occur within individual monomeric constituents of human Hb
(55). Monomeric nonvertebrate Hbs showing heterotropic effects provide an ideal opportunity to analyze the roles of individual Bohr groups compared with vertebrate Hbs, where these interactions are
entangled with quaternary structural changes (500).
-NH2 groups. Curiously, a specific, positive
effect of CO2 on O2 affinity, opposite to that
in vertebrate Hbs, has been demonstrated in the extracellular Hbs of
the polychaetes Arenicola marina (333), Neoamphitrite figulus (654), the
oligochaete Megascolides australis (634) and
the crustacean Artemia franciscana (124). The
regulatory significance of any of these effects remains obscure.
Table 3.
Kinetic constants for O2 binding
Vertebrate Hbs and Mbs, with the exception of elephant Mb, have His and
Leu at the distal positions E7 and B10, respectively, with the distal
His able in some cases to hydrogen bond with the bound O2,
thus stabilizing the oxygenated structure (429). In many
nonvertebrate globins, the E7His and B10Leu residues are replaced by
Gln and Tyr, respectively, resulting in a tight cage for O2
and much higher O2 binding affinities relative to
vertebrate Mb. Two types of kinetic mechanisms are now known to
underlie the extremely high O2 binding affinities of some
nonvertebrate Hbs and Mbs. In one, exemplified by the perienteric Hb
from the nematode parasite Ascaris suum, hydrogen bonding of
the bound O2 in the distal cavity to the B10Tyr is thought
to be responsible for its very low O2 dissociation rate,
4,500-fold smaller than in vertebrate Mb (koff = 0.004 vs. 18 s
1, Table 3) (431). This
low dissociation rate determines the extremely high O2
affinity, which is 450-fold higher than Mb, even though the O2
association rate of Ascaris Hb is 10-fold lower than
Mb (kon = 1.5 vs. 15 µM
1 · s
1, Table 3). The other type of
kinetic mechanism found recently in trematode Hbs, where both distal
residues at positions E7 and B10 are Tyr, combines a low dissociation
rate (koff = 0.03-0.4 s
1)
with a high association rate (kon = 100-200 µM
1 · s
1, Table 3) to
produce even higher O2 affinities (442).
However, the Hb of another trematode, Dicrocoelium, in which
one of the two distal tyrosines is turned out of the heme pocket, binds
O2 rapidly (kon = 300 µM
1· s
1), but has an O2
affinity only 10-fold higher than Mb due to a 2-fold higher
dissociation rate (137, 341).
Symbiotic plant Hbs, which have E7His and B10Tyr (9) and very high O2 binding affinities, >10-fold higher than vertebrate Mb (Table 3), appear to be intermediate between the nematode and trematode Hbs. In contrast to the nematode and trematode Hbs, the B10Tyr does not interact with the bound O2 to stabilize it. X-ray crystallographic studies imply hydrogen bonding to E7His and close contacts with E11Val (Leu in soybean) (225). Although the association rates of the plant Hbs are comparable, their dissociation rates are appreciably higher than the other two groups, resulting in 30- to 300-fold lower O2 affinity (192) (Table 3). The recently discovered nonsymbiotic plant Hbs (9), which seem to have the same distal E7His and B10Tyr residues, have O2 binding affinities as high as the nematode and trematode Hbs, due primarily to very low dissociation rates (31, 120, 147). In this case, the very high O2 affinities are likely due to stabilization of the bound O2 via a hydrogen bond to the E7His inferred to exist in barley Hb (120). Furthermore, the HisE7Leu mutation in rice Hb increases the O2 dissociation rate by more than 1,000-fold (31).
In several nonvertebrate globins, the distal E7His is replaced by a
nonpolar residue. Such substitutions in vertebrate Mb result in 10- to
100-fold reductions in O2 affinity (460). The monomeric Hb from the polychaete Glycera has a distal Leu
and very high rates of association and dissociation
(kon = 190 µM
1· s
1 and
koff = 1,800 s
1, Table
3), which result in a ~10-fold lower affinity than Mb. Although the
Mb from the gastropod mollusc Aplysia also has a nonpolar
Val at E7, the bound O2 appears to be stabilized by a hydrogen bond with the long and flexible E10Arg that rotates into the
heme cavity; consequently, its O2 dissociation rate is
smaller than in Glycera Hb (koff = 70 vs. 1,800 s
1, Table 3) and its O2
affinity is higher (51, 661).
Although our understanding of the roles played by residues close to the
distal heme cavity underlying the differences in ligand binding
kinetics has increased very substantially over the last decade, due
mostly to the efforts of Olson and co-workers, it is far from
complete. Thus, while single, double, and even triple mutants of
vertebrate Mb display the qualitatively correct alterations in ligand
binding kinetics, the effects are not quantitative, i.e., they do
not reproduce the properties of the wild-type nonvertebrate Mbs and
Hbs. A triple mutant of sperm whale Mb designed to simulate the ligand
binding properties of Aplysia Mb
(ArgCD3
Asp/HisE7
Val/ ThrE10
Arg) (499) has
much higher association and dissociation rates, resulting in a fivefold
lower affinity than the native Mb (kon = 88 µM
1 · s
1, koff = 2,300 s
1, K = 0.039 µM
1 vs. 15 µM
1 · s
1,
70 s
1 and 0.21 µM
1, respectively, Table
3). Another triple mutant designed to mimic Ascaris Hb
(LeuB10
Tyr/HisE7
Gln/ThrE10
Arg) has an O2
dissociation rate of 1 s
1, >10-fold lower than
Mb, but still 250-fold higher than the native Hb (694).
The limited success achieved with engineered vertebrate Mb designed to
simulate nonvertebrate Hb and Mb ligand binding properties, stands in
contrast to the much higher level of success achieved with mutants of
human Hb designed to mimic the O2 affinity of
high-altitude geese Hb (270, 640) and the
bicarbonate effect of crocodile Hb (314). The obvious
explanation is that the differences in tertiary structures between
vertebrate Hbs are much smaller than those between mammalian Mb and
nonvertebrate globins, reflecting the much higher percent identity of
sequences and much closer phylogenetic relationship among the vertebrates.
3. O2 transport by circulating Hbs
Circulating Hbs occur commonly in metabolically active organisms. The conduits for O2 transport in invertebrates vary widely: cellular and dissolved Hbs occur in blood (vascular fluids) and in hemolymph and coelomic and hemal fluids. Although invertebrates generally lack closed blood vascular systems, their extravascular fluids may be subjected to well-defined circulations that channel the internal distribution of Hb-bound O2. In aquatic larvae of the insect Chironomus, a structured circulation of the Hb-rich hemolymph is secured by a well-developed system of internal septae that even extend into tubular appendages (425). Another interesting example is the scaleworm Branchipolynoe, which lives commensally in the mantle cavity of bivalves from deep-sea hydrothermal vents. In adaptation to its hypoxic, sulfide-rich microhabitat, its gills have very large surface areas and small O2 diffusion distances. Unlike other polychaetes, its gills lack blood vessels but are perfused with Hb-rich coelomic fluid through the action of cilial and myoepithelial contractions (241).
Well-developed, closed vascular systems in invertebrates with distinct hearts, arteries, capillary networks, and veins that permit control of blood distribution are found only in annelids, vestimentiferans, and pogonophorans (377, 476). In large species such as the giant earthworm Glossoscolex giganteus and the polychaete Arenicola marina, blood propulsion is aided by periodic contractions of the blood vessels and gills (271, 277, 351). Unlike polychaetes and oligochaetes, the closed blood vascular system of hirudineans (leeches) is derived from the greatly reduced coelome (377). Although lacking coelomes, nemerteans routinely have a closed system of vessels that are lined with endothelia as in vertebrates (377). Echinoderms (starfish, sea urchins, and sea cucumbers) have coelomic, water vascular, and hemal fluid systems whose interrelationships are not well understood, although each may contain RBCs (355, 377, 476).
O2 transport in closed circulations may be quantified by
the Fick equation, MO2 = Vb(ca
cv), where
MO2 is the rate of O2 delivery to
tissues, Vb is the fluid perfusion rate, and
(ca
cv) is the difference in
O2 content between "arterial" (postrespiratory surface)
and "venous" (prerespiratory surface) fluids. The O2 content difference thus increases proportionally with O2
carrying capacity (Hb concentration) and depends on the "loading"
tension at the respiratory surfaces (skin, gills, or lungs) and
"unloading" tension in the respiring tissues, the Hb-O2
affinity, and the shape of the equilibrium curve. The O2
content difference (ca
cv) is difficult
to assess with available techniques in small and fragile invertebrates.
For the lugworm Arenicola cristata, the pre- and
postbranchial oxyHb saturation difference (0.06 ml O2/ml
blood), O2 carrying capacity (130 ml/l), and O2
consumption rate (0.158 ml · kg
1 · min
1) (352) indicate a cardiac output of 2.7 ml · min
1 · kg
1 at 22°C
(575, 576).
4. O2 storage
Heme-bound O2 forms vital O2 stores in invertebrates subjected to intermittent O2 supply, particularly in cyclic-ventilating animals and gut parasites, and in nerve and muscle tissues that exhibit intermittent high-level activities (33, 96, 664). The duration of the O2 stores obviously increases with a reduction in metabolic rates under hypoxic conditions, as occurs in "oxyconforming" species (629, 630).
Several studies illustrate the significance of tissue Hbs as O2 stores. In the minute gastrotrichan Neodasys, which is below the "Harvey size limit," the Hb-containing cells constitute 14% of the total body volume and are closely associated with nerve and muscle tissues; the heme concentration (18.5 mM) suffices for 17 min of O2 consumption by an active animal under aerobic conditions (96).3 A detailed comparative electrophysiological study of several bivalve species with and without Hb in their nerve tissues (145, 319, 320, 322) showed that although there were no obvious electrophysiological differences between cerebrovisceral connectives with and without neuroHb, the connectives with neuroHb consumed much less O2 during action potential conduction than connectives and other nerves without neuroHb. Thus the neuroHb-containing connectives may effectively use the neuroHb O2 store to enable the organism to use continued neuromuscular activity under hypoxic conditions. O2 bound to the neural tissue Hbs in the clams Tellina alternata and Spisula solidissima and the nemertean worm Cerebratulus lacteus can support the O2 requirements of the nerves for up to 30 min during anoxic periods (145, 320, 602).
RBC Hbs may also serve as O2 stores. In the phoronid Phoronis architecta, the coelomocyte Hb functions as an O2 store for ~15 min (599), whereas coelomic PO2 values in the echiuroid Urechis caupo indicate a longevity of the RBC Hb reservoir of up to 3 h (355, 439). Measurement of the rates of heat dissipation and O2 consumption in two terebellid polychaetes, Enoplobrachus sanguineus with Hb-containing coelomocytes and Lysilla alba lacking them, revealed a difference in metabolic response upon return to normoxic conditions after exposure to anoxic conditions: a much higher O2 consumption rate in the Hb-less species, indicating the repayment of an O2 debt incurred during the hypoxic period (145). Similar experiments with two bivalves species showed a different effect: under hypoxic conditions the rate of heat dissipation of the neuroHb-containing Tellina alternata remained high, while the metabolic rate cycles of the neuroHb-lacking T. plebeius disappeared (145). These studies show that while the response of marine invertebrates to hypoxic conditions can be complex and variable, the presence of Hb may play a role in the partitioning of metabolic flux into aerobic and anaerobic processes.
Extracellular Hbs may also have O2 storage roles. In the periodically ventilating tubiculous larvae of the insect Chironomus, the duration of the O2 stores corresponds well with the ventilatory pauses (624), which they thus may permit. The O2 carried in the blood and coelomic fluids of the hydrothermal vestimentiferan Riftia pachyptila (containing 3.5 and 1.9 mM heme, respectively) can support respiration at the constant and maximum rate for 35 min (87).
A special case of O2 storage is found in the diving insects Buenoa and Anisops, where large Hb-laden tracheal cells that are penetrated by tracheoles appear to release O2 in periods of O2 paucity to help maintain buoyancy (385, 386, 652).
5. Facilitation of O2 diffusion
The diffusion of O2 through tissues is enhanced through its participation in a second, equilibrium reaction with Mb-like proteins, given that the total O2 flux is the sum of the fluxes of O2 and protein (382). Facilitated diffusion requires O2 loading at sites with sufficient O2 tension and its release at sites with low tension. Large proteins will not contribute significantly since diffusion varies inversely with molecular weight, and significant facilitation requires a sufficient carrier concentration to create a gradient that supplies O2 faster than the diffusion rate of free O2 (232). Recent studies with vertebrate muscle reveal that the in situ cellular diffusion coefficient of Mb is much lower than earlier reported, that steric hindrance to Mb diffusion is dominated by cellular architecture rather than by overall protein concentration, and that significant facilitated diffusion requires very low PO2 values and high Mb concentrations (279, 280). Monomeric Hbs may play important roles; although their diffusion rate is only 1/20 of that of free O2, their concentrations in tissues may greatly exceed that of free O2 (some 30-fold in working heart muscle and 10,000-fold in soybean root nodules) (668).
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III. OCCURRENCE AND FUNCTIONAL AND MOLECULAR PROPERTIES |
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This section briefly reviews the phylogenetic and anatomical distribution of Hbs and focuses on the functional and structural properties of nonvertebrate Hbs. Although Hbs tend to occur more generally in organisms facing lack of O2, their occurrence defies strict categorization in terms of phylogeny and environmental conditions. On the basis of their histological sites, quaternary structures, and physiological properties, nonvertebrate heme proteins can conveniently be categorized into 1) noncirculating cytoplasmic Hbs and Mbs that occur in unicellular organisms or in tissues of higher organisms, 2) RBC Hbs that occur in nucleated RBCs circulating in any fluid, and 3) extracellular Hbs that occur in solution in body fluids. The tremendous range in O2 binding properties encountered in nonvertebrate Hbs is illustrated in Table 2 and Fig. 3.
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A. Cytoplasmic Hbs and Mbs
Cytoplasmic Hbs and Mbs exhibit an even more intermittent phylogenetic distribution than circulating Hbs (520), occurring episodically in prokaryotes (bacteria), unicellular eukaryotes (yeasts, protozoans), flowering plants, and various tissue and cell types (muscles, nerves, gills, tentacles, and gametes) of phylogenetically diverse nonvertebrates animals. Although tissue Hbs are commonly 16- to 18-kDa monomers, dimeric 32- to 35-kDa Mbs occur in radulae of some gastropod mollucs (63) and in annelids (553). Smaller chain, 11- to 12-kDa "miniHbs" are encountered in cyanobacteria, protozoans, and nemerteans (264, 533, 602).
Mbs are encountered in body walls and probosces of annelids (179, 553, 557, 644) and in radular, body wall, adductor, and stomach muscles of molluscs (445, 515, 520, 554, 558). Nerve Hbs are scattered among different taxons including nematodes (Ascaris), annelids (Glycera and Aphrodite) (660), the echiuroid Urechis, lamellibranch molluscs (Tivela, Spisula), gastropod molluscs (Busycon and Aplysia) (319, 475), nemerteans (603, 605), and arthropods (Daphnia, where ganglial Hb concentration rises in response to hypoxic conditions) (163). In molluscs and annelids, it occurs at millimolar concentration in glial cells surrounding the nerve cord (318, 322, 323). As in vertebrates, the O2 affinities of invertebrate Mbs are generally intermediate between those of circulating Hbs and mitochondrial cytochrome oxidase, thus suggesting that they form intermediate O2 transfer stations.
The physiological roles of cytoplasmic Mbs have received less attention than those of circulating Hbs. This inattention was based on a lack of cooperativity and the perceived absence of functional heterogeneity, conformational transitions, and sensitivities to pH and allosteric effectors. Recent studies have shown these perceptions to be invalid (11, 185, 301, 442, 482) and have brought to light a variety of potential physiological roles for the cytoplasmic Hbs and Mbs.
1. Prokaryote and unicellular eukaryote Hbs
A) FLAVOHEMOGLOBINS. In the last 10 years, members of a family of ~43 kDa two-domain ("chimeric") flavohemoproteins (FHP) or FHb, comprising an NH2-terminal globin domain and a COOH-terminal flavin-binding domain, have been discovered in several microorganisms. Their functional significance is under intensive scrutiny. The Escherichia coli heme protein HMP was the first FHb to be sequenced by Poole and co-workers (604) in the course of an attempt to identify the genes encoding dihydropteridine reductase activity. Like the E. coli HMP, the FHb from the Gram-negative, hydrogen-oxidizing and denitrifying bacterium Alcaligenes eutrophus shows the highest sequence similarity to the homodimeric Hb from Vitreoscilla (107, 621); its COOH-terminal portion of ~250 residues appears to belong to the ferredoxin reductase-like family of FAD-dependent oxidoreductases, despite low sequence identity. Although there is high sequence similarity between the globin domains of E. coli and Alcaligenes FHbs and the single-domain Hb from the bacterium Vitreoscilla (see sect. IIIA1B), the crystal structure of Alcaligenes FHb (150, 413) contained a tightly bound phospholipid in the heme cavity that precluded any determination of protein-heme interaction at the distal side of the heme. Closely related FHbs have been found in other bacteria, Erwinia chrysanthemi (157), Salmonella typhimurium (109), Bacillus subtilis (336), and Mycobacterium tuberculosis (97, 246), as well as in the yeasts Saccharomyces cerevisiae (699) and Candida norvegensis (266). Membrillo-Hernandez and Poole (380) have used a primer based on the consensus sequence of the foregoing FHbs to search for Hb-like genes in other bacteria. Such genes were found in Campylobacter jejuni, Listeria monocytogenes, Rhizobium leguminosarum, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Staphylococcus aureus.
Although the kinetics of O2 binding with
Saccharomyces and bacterial FHbs have not been determined,
the Candida FHb has a very high O2 affinity
[dissociation constant (KD) = 0.02 µM]
due to a high association rate and a low dissociation rate, 850 µM
1·s
1 and 17 s
1,
respectively (416, 417).
E. coli HMP is expressed under aerobic and anaerobic growth conditions and has a high O2 affinity (KD ~2.6 µM); it has been suggested that it could serve as an O2 sensor by combining with intracellular O2, thus limiting flavin reduction in the aerobic state (435, 436). Because it is also able to reduce Fe(III), cytochrome c, and the Azotobacter regulatory flavoprotein NifL (348, 436), it might affect the redox status and contribute to the regulation of the fnr gene (fumarate, nitrate respiration) and the soxRS genetic locus.
The expression of FHbs appears to be sensitive to alteration in O2 concentration; it is enhanced by hyperoxic conditions in Saccharomyces (110, 696) and induced by lack of O2 in the bacteria Alcaligenes and Bacillus (336, 440). Although the FHb deletion strains of E. coli do not appear to be sensitive to superoxide (378, 379), a Saccharomyces FHb deletion strain was found to be sensitive to oxidative stress (696).
Several recent results have indicated the involvement of FHbs in the
metabolism of nitrogen oxides. Marked upregulation of E. coli HMP by NO was observed under aerobic and anaerobic conditions (435), and Bacillus subtilis FHb was found to
be induced by nitrite (336). Crawford and Goldberg
(109) showed that Salmonella FHb has a specific
role in the protection from nitrosoglutathione, and presumably NO, that
is independent of O2. They also demonstrated that under
anaerobic conditions, the inducible FHb protects Salmonella from acidified nitrite or an NO donor compound (108,
109). Likewise, Poole and co-workers
(378, 379) showed that E. coli HMP
expression was upregulated in the presence of NO and provided
protection against oxidative stress. Anaerobic growth of an
Alcaligenes FHb
strain on nitrite was found
not to accumulate nitrous oxide as a transient intermediate
(107). Gardner et al. (177)
isolated an O2-dependent and cyanide-sensitive NO
dioxygenase activity from NO-resistant E. coli and
identified it as HMP, a result confirmed by Hausladen et al.
(226). These results and more recent ones (512a) suggest that FHbs are protective against
nitrosative stress. It is likely that FHbs have an additional function,
since the O2-dependent NO dioxygenase activity cannot
explain the protection FHb affords against nitrosoglutathione in
anaerobic Salmonella (109) or NO gas in
anaerobic E. coli (177). Nor does it explain the benefit of increased FHb expression in anaerobic E. coli
or B. subtilis grown with NO, nitrate, or nitrite
(176, 336, 440). Kim et al.
(299) have demonstrated that the E. coli FHb
has NO reductase activity and have suggested that this activity may
account for the anaerobic protection by FHbs.
A very interesting point made by Gardner et al. (177) is that the agreement between the estimated origins of primeval Hb, blue-green algae, and free atmospheric O2 at ~1.8, ~2.3, and ~1.8 billion years ago, respectively (699), suggests a plausible coevolution of Hb and NO dioxygenase functions. Linkage is possible because the dioxygenase activity of FHbs requires O2 and because toxic NO is produced by an O2-dependent oxidation of nitrogen compounds.
B) BACTERIAL HBS. The Gram-negative bacterium
Vitreoscilla, an obligate aerobe, contains a dimeric Hb
(621) whose sequence is more similar to the globin domains
of FHbs and plant Hbs than other invertebrate Hbs (31).
Its expression is upregulated at low O2 levels
(139, 140), and ~40% of it occurs in the
periplasmic space (296). The Hb occurs as a stable oxy
form, has a normal O2 association rate and an unusually
large dissociation rate of 5,600 s
1 (414),
and may play a role in the transfer of O2 to the terminal oxidases under hypoxic conditions by facilitated diffusion
(664, 668). The crystal structures of the
ferriHb and of its azide complex have suggested hydrogen bonding of the
distal B10Tyr hydroxyl via a water molecule to the O2
ligand (537). The discovery of a NADH-dependent
flavin reductase in Vitreoscilla suggests that the heme
binding and flavin binding domains have separated in this bacterium
during evolution (267).
Vitreoscilla Hb gene was found to be strongly expressed in E. coli, where its presence promotes growth under microaerobic conditions (295). In the absence of the two E. coli terminal cytochrome oxidases, cytochromes o and d, the expressed Hb behaves as a terminal oxidase (141). E. coli mutants lacking the fnr gene product were unable to activate the Vitreoscilla Hb gene under microaerobic conditions (275). Bailey's group (283, 586) has documented the involvement of Vitreoscilla Hb in enhancing the activity and efficiency of the electron transport chain in E. coli under hypoxic conditions. The beneficial effect of the heterologous Vitreoscilla globin gene expression in improving O2 utilization by the host cells and their increased growth under hypoxic conditions is not limited to E. coli: it has been found to occur in other bacteria, in yeast, in a mammalian cell line (284), and in transgenic plants (237).
Two Hb genes glbN and glbO occur in the genome of
Mycobacterium tuberculosis (97). The deduced
amino acid sequences are similar to those of algal, protozoan, and
cyanobacterial Hbs (106). Spectroscopic studies of the
expressed HbN indicate the distal residue to be Leu, with Tyr in the
B10 position (680). It has a substantial cooperativity
(n50 = 2), probably due to
self-association of the deoxy form and an extremely high
O2 binding affinity (P50 = 0.013 Torr at
20°C), resulting from fast association and slow dissociation rates of
25 µM
1·s
1 and 0.2 s
1,
respectively (106). Mutation of the B10Tyr to Leu and Phe
resulted in an increase in the dissociation rate constant by more than two orders of magnitude (45 and 30 s
1, respectively)
(106), indicating the importance of the stabilization of
the bound O2 through hydrogen bonding with the Tyr
hydroxyl. It is likely that the oxyHb has a role in protecting the
Bacillus from NO similar to the role of FHb in E. coli (176, 177).
C) TRUNCATED CYANOGLOBINS. Cyanoglobin is a
single-chain Hb of 118 residues found in the photoautotrophic
cyanobacterium Nostoc commune, which is capable of aerobic
nitrogen fixation (438), and in Synechocystis
(286). Both sequences have substantial identities with the
truncated Hbs from the protozoans Paramecium and
Tetrahymena, 116 and 121 residues long, respectively.
Nostoc cyanoglobin synthesis is induced by nitrogen
starvation and anaerobic incubation; the positioning of its gene
between two other genes essential for nitrogen fixation suggests it is
involved in the latter function, perhaps as an O2 scavenger
(10). Because protozoa and cyanobacteria often occur
together and symbiosis between the two groups is known to occur, it is
likely that protozoan Hbs are of cyanobacterial origin
(569). A recent study (315a) showed that, in
contrast to the Hb genes of Paramecium, those of
Tetrahymena and Nostoc lack introns. Cyanoglobin
binds O2 with a rate (390 µM
1·s
1) (570) that is
among the highest known (Table 3); however, a fairly high
O2 dissociation rate gives cyanoglobin an affinity (P50 ~0.55 Torr at 20°C; Fig. 3) intermediate between
Mb and the LegHbs (570). Cyanoglobin has a higher rate of
autoxidation than sperm whale Mb and a ~100-fold faster rate of hemin
loss, due probably to the absence of a D helix evident from sequence
alignment, which is known to destabilize the heme-apoMb complex
(658).
D) TRUNCATED PROTOZOAN HBS. Although the presence of heme proteins in ciliated protozoans was shown many years ago (293), little was known about them except for Paramecium Hb, which exists as a monomeric globin with several different isoforms (6 and 12 components in P. caudata and P. aurelia) and an O2 affinity comparable to mammalian and Nostoc Mb (P50 ~0.6 Torr at 20°C) (233, 263, 501, 510, 588, 593-596). Shikama and co-workers (264, 265, 534) have sequenced the Hbs from Paramecium caudatum, Tetrahymena pyriformis, and T. thermophila and found them to have 116-121 residues, with deletions occurring in the A- and D-helical as well as in the CD-interhelical regions. Tetrahymena Hb has an O2 affinity (~0.2 Torr) (316) comparable to that of the other truncated Hbs. Curiously, its rate of autoxidation is ~10-fold slower than that of Paramecium Hb, and similar to that of sperm whale Mb. It is possible that the few additional residues relative to Paramecium Hb and the even shorter, 109-residue nerve tissue Hb from the nemertean Cerebratulus Hb (602), could be the reason for the greater stability of Tetrahymena Hb.
E) ALGAL HBS. Recently, Guertin and co-workers (102) discovered three globin genes in the genome of the green unicellular alga Chlamydomonas eugametos; two genes were cloned, only one of which requires photosynthesis for expression (102). They code for 164- and 171-residue globins, which occur in the chloroplast at concentrations of up to 130 nM and are distributed between the proteinacious ribulose diphosphate carboxylase-rich pyrenoid and the thylakoid membrane regions. Although the sequences exhibit the highest similarity to the Paramecium (264), Tetrahymena (265), Nostoc (438), and Synechocystis (286) Hbs, they do not have the deletions associated with the truncated globins. The algal ferroHb forms stable complexes with O2 and CO, and the ferriHb forms complexes with thiols as well as with azide and cyanide (104). Spectroscopic and kinetic studies have established that the bound O2 forms multiple hydrogen bonds with the putative distal E7Gln and B10Tyr, residues, which are found predominantly in high O2 affinity invertebrate Hbs (104). The most recent spectroscopic study of Chlamydomonas Hb shows it to differ from the other E7Gln- and B10Tyr-containing Hbs, in that it is the B10Tyr and not the E7Gln that ligates the heme iron in the ferri form, aided by a strong interaction with E10Lys (119). The occurrence of a Hb in Chlamydomonas chloroplasts raises the question of its functional role in such a high O2 tension environment. Because of its small concentration, chloroplast Hb is unlikely to have a storage or facilitated diffusion function. In addition, the O2 dissociation rate being one of the slowest known (half time = 49 s), it is unlikely to support any function that requires dissociation of the bound O2. Chlamydomonas Hb has many ligand binding properties in common with the nonsymbiotic plant Hbs: slow dissociation of O2, a 6-coordinate low-spin Fe(III) form, ligand binding to a 6-coordinate low-spin Fe(II) form which requires prior dissociation of the sixth ligand, and fast autoxidation (103, 119).
The three-dimensional structures of Paramecium caudatum
Hb and of a truncated form of Chlamydomonas eugametos Hb
have been recently solved by X-ray crystallography by Bolognesi (M. Bolognesi, personal communication). Both proteins display very similar
tertiary sructures, consisting essentially of helices B, C, E, G, and H of the conventional globin fold. Only one
-helical turn is found in
the expected A- and F-helix regions. Particularly, almost the whole
F helix is substituted by an extended protein loop, which may reflect
specific sequence motifs (including Gly residues) in this molecular
region. TyrB10 and GlnE7 residues are properly positioned to form
direct hydrogen bonds to the distal site ligand.
2. Plant Hbs
In contrast to Hbs from the animal kingdom that have been known at least since Cain (First Book of Moses, chapter 4), "symbiotic" plant LegHbs in soybean root nodules were first described in 1939 by Kubo (334). The last decade has witnessed the discovery of another class of plant Hbs: the "nonsymbiotic" plant Hbs that are expressed at low concentrations in nonnodular, rapidly growing and metabolizing plant tissues and are widely distributed in both mono- and dicotyledonous plants (9, 31, 147, 232).
A) SYMBIOTIC HBS. LegHbs occur in nitrogen-fixing nodules formed as the result of infections of legume roots with one of four genera of prokaryotes, called rhizobia (17, 18); they belong to multigene families and comprise the most abundant soluble protein in the cytoplasm of the root nodules at local concentrations as high as 2-3 mM (167). The crystal structures of lupin (225) and of soybean LegHbs (222) have established the presence of His at both the proximal and distal heme sites.
Due to the combination of high O2 association rates and
normal dissociation rates, 100-300
µM
1·s
1 and 5-30
s
1, respectively (192, 665),
LegHbs have extremely high O2 affinities: P50 = 0.04-0.07 Torr at 20°C for three components of soybean Hb (Table 2, Fig. 3), and intermediate for a mixture of the components, indicating the absence of specific interactions, at least in dilute solutions (16). Direct equilibration measurements (A. Rashid and R. E. Weber, unpublished results) show a slightly lower
affinity (P50 = 0.14 Torr at 25°C).
The kinetics of oxygenation of soybean LegHb distal histidine mutants support the hypothesis that the high affinity is determined mainly by enhanced accessibility and reactivity of the heme group (222). Contrary to the persistent notion that LegHbs act as O2 scavengers to prevent inhibition of nitrogen fixation, it is now clear that LegHbs function to provide an adequate supply of O2, albeit at low concentrations, to the terminal oxidases of the symbiotic bacteroids (17). This occurs at a stabilized free O2 concentration sufficient for the functioning of the oxidase but low enough to prevent inactivation of the nitrogenase enzyme also located in the bacteroids (18). The only nonlegume plant known to form a symbiosis with rhizobia is Parasponia andersonii, where a single gene appears to encode a Hb found in roots and root nodules (49). Although its O2 binding kinetics are similar to LegHbs (669), indicating a similar function, its sequence differs from other legHbs and is more similar to the nonsymbiotic Hbs. Symbiotic (actinorhizal) association between Frankia, a member of moldlike bacteria (actinomycetes) with a diverse range of dicotyledonous plants such as Casuaria glauca and Myrica gale, also results in the formation of nitrogen-fixing and Hb-containing root nodules (424, 498). The sequence of Casuarina Hb has been determined; its O2 affinity is similar to that of LegHbs (159).
B) NONSYMBIOTIC HBS. The nonsymbiotic Hbs of plants occur in the roots, stems, or germinating seeds of mono- and dicotyledonous plants at low concentrations, ~1-20 µM/kg wet tissue, and have amino acid and gene sequences quite distinct from those of LegHbs (9, 18, 29, 30, 232). Except for barley (539), two or more globin genes are expressed in diverse tissues of soybean (9), Arabidopsis (583), and rice (31), with the highest levels of expression occurring in metabolically active or stressed tissues (30).
Appleby et al. (20) were the first to propose an
O2 sensing role for nonsymbiotic Hbs. The latter occur at
very low concentration, ~100 nM, and could trigger an anaerobic
response via formation of the deoxy form under lower than normal
O2 concentrations. Based on the expression at moderate
levels of nonsymbiotic Hb genes in soybean and Casuarina,
Andersson et al. (9) proposed that the principal role of
the nonsymbiotic Hb could be to facilitate intracellular diffusion of
O2 to the mitochondria in metabolically active cells to
meet an increased demand for oxidative respiration. Although
Rhizobium-containing nodules (legumes or Parasponia) that fix nitrogen in the absence of cytoplasmic Hb have not been observed, some Actinorrhizal symbioses do not require it for survival. Thus, in the former case, a facilitated flux of O2 via the
Hb appears to be a necessary part of such symbioses (C. A. Appleby, personal communication). The kinetics of ligand binding
determined recently with native and recombinant nonsymbiotic Hbs have
shown that the high O2 binding affinities (7-1,800
µM
1) are due to a moderate association rate (1-620
µM
1s
1) coupled with a very slow
dissociation rate (0.028-51 s
1) exceeded only by
Ascaris Hb (31, 120,
147, 222, 583), probably due to
stabilization of the bound O2 through hydrogen bonding to
the distal E7His (120). These results do not provide support for either of the two proposed Hb roles: O2 sensing
and facilitation of O2 transport.
Arredondo-Peter et al. (30) have proposed that nonsymbiotic plant Hbs could be involved in more than one metabolic pathway. The possible roles include, 1) O2 scavenging suggested by their high O2 affinity; 2) participation in electron transfer via interaction with a flavoprotein by analogy with the bacterial and yeast FHbs; 3) binding of O2, NO, and CO, which are known to be ligands, as part of a sensing mechanism including involvement in the regulation of cellular metabolism in response to fluctuation in the ligand level; and 4) binding to small organic molecules and function in fatty acid transport or participation in the synthesis of organic compounds under anaerobic conditions. In the case of barley, there is some evidence that the Hb is involved in some aspect of ATP metabolism (402). Barley Hb is very stable when liganded and oxidizes rapidly when ligand is removed (147). It has a redox potential of 180 mV, close to that of LegHbs, and is thus unlikely to act as an electron transfer protein (232). Recent work by Hill's group (232, 507) on maize cells transformed with barley Hb strongly indicate a role for the Hb in glycolytic metabolism, perhaps as an oxygenase.
3. Platyhelminths
Hbs and Mbs occur in representatives of the classes Monogenea (mostly ectoparasites of aquatic vertebrates), Trematoda (flukes), and Turbellaria (free-living flatworms) (35) and may also occur in the class Cestoda (tapeworms) as indicated by red patches in neck and scolex regions of several species (342).
After Wharton's discovery in 1938 of Hb in Cercorchis robustus that parasitizes turtles (656), Hb has been recorded in a large number of trematodes from a diverse range of vertebrate and invertebrate hosts (e.g., Isoparorchis hypselobagri from the swim bladder of the catfish Wallago attu, Explanatum explanatum, Paramphistomum epiclitum, and Gastrothylax crumenifer from the rumen and bile ducts of Indian buffalo Bubalus bubalis, Gastrodiscoides hominis from pig caeca, Notocotylus triserialis from duck digestive caeca, Dicrocoelium dendriticum from sheep liver, and Paravortex scrobiculariae and Proctoeces subtenuis from the intestine and kidney, respectively, of the estuarine bivalve Scrobicularia plana) (218, 349, 432). The major forms of platyhelminth Hbs appear always to be monomeric (73, 444, 500), and disulfide-bonded dimer formation may be time dependent, as observed with Isoparorchis hypselobagri Hb (444).
Except for the recent work by Moens and co-workers
(442) on trematodes, there is a paucity of information on
the structure and properties of platyhelminth Hbs. The primary
structures of the monomeric Mbs from Paramphistomum
epiclitum and Isoparorchis hypselobagri have been
determined (442). Both Mbs exist in at least four isoforms
and have Tyr residues in the B10 and E7 positions. Because trematodes
do not have a coelom, their Mbs may represent the most primitive globin
among multicellular organisms. The kinetics of O2 binding
demonstrated very high rate constants for association, 108 and 205 µM
1·s
1 for Paramphistomum
and Gastrothylax, respectively (298), coupled with dissociation rate constants of 0.033 and 0.4 s
1,
respectively, leading to O2 affinities higher even than
that of Ascaris Hb (Table 2). Although the association rates
are similar to those of the LegHbs, the dissociation rates are more
than an order of magnitude lower. A solution 1H-NMR study
of Paramphistomum metHb heme cavity was unable to determine
the orientation of the E7Tyr but indicated that the cavity was compact
(695). The Hb of the liver fluke Dicrocoelium dendriticum, which has not been characterized as well, has a lower O2 affinity (P50 = 0.016-0.15 Torr at
25°C) (500). Although it also appears to have two Tyr
residues in the distal cavity (341) and has a similar
association rate, it has a normal dissociation rate (137).
Dicrocoelium Hb exhibits a large reverse acid Bohr effect
(
= +0.96) that reflects proton uptake in the T
R
transition, in contrast to monomeric Chironomus Hbs, which
show only normal Bohr effects and vertebrate Hbs that possess a normal
alkaline Bohr effect (due to proton dissociation upon oxygenation) and a reverse acid Bohr effect at low pH (500).
Trematode Hbs exhibit pronounced heterogeneity. D. dendriticum Hb comprises two major (HbI and HbII) and one minor (HbIII) components (500), Paramphistomum epiclitum has two, and Explanatum explanatum and Gastrothylax crumenifer Hbs consist of at least two and seven isoforms, respectively (443). The isoHbs from E. explanatum, G. crumenifer, and P. epiclitum show extremely high O2 affinities (P50 ~0.09 Torr at 37°C) and striking functional differentiation (an ~4-fold variation in O2 affinity among G. crumenifer isoHbs) (443). Explanatum, Gastrothylax, and Paramphistomum Hbs display very low M values: 0.8, 0.4, and 0.3, respectively (Table 1), resulting from a high O2 affinity rather than a low CO affinity (298). The high O2 affinity favors O2 transfer from the host, although it appears unfavorable for unloading O2. In confined specimens of the free-living trematode Phaenocora unipunctata, the oxyHb absorption bands appear and disappear reversibly in response to increase and decrease in O2 tensions (111).
The Hb from a metacercaria stage of a gymnophallid trematode, which
parasitizes the nephridial sacs of the marine polychaete Amphitrite ornata, displays a low in vivo O2
affinity compared with mammalian Mb (P50 = 1.1 Torr at
20°C), pronounced cooperativity, and a marked Bohr effect (n = 2.2,
=
0.35 below pH 7.4) (601). The extracted
Hb appears to contain (~16 kDa) monomers and a large molecular weight
(~2.5-3.0 MDa) fraction, which if confirmed in vivo would be unique
among tissue Hbs.
Fasciola hepatica has an intracellular Hb that is located preferentially around the vitellaria and uterine coils and is highly antigenic (375).
4. Nematodes
A) TISSUE HBS. An early survey of nematodes indicated a majority to have Hbs (342). Blaxter (44) has grouped the Hbs occurring in at least 23 genera of the orders Strongylida, Ascaridida, Rhabditida, Spirurida, and Enoplida into three molecular classes: 1) monomeric, intracellular Mbs found in the body wall and pharyngeal muscles; 2) tetrameric, extracellular, ~70 kDa Hbs occurring in the cuticle; and 3) extracellular, ~350 kDa octamers of two-domain chains found in the perivascular or pseudocoelomic fluid. Although only a monomeric Hb has been found in the rhabditid Caenorhabditis elegans (514) and the trichostrongyloid sheep intestine parasite Trichostrongylus colubriformis (166), another trichostrongyloid Nippostrongylus brasiliensis and the ascarid Ascaris suum from pig intestines have all three Hbs (45, 410-412, 662). The pseudocoelomic Hbs are discussed in section IIIC2.
Ascaris Mb has the same B10Tyr and E7Gln residues that are considered to be determinants of the high O2 affinity in the extracellular Hb (46). However, contrary to the extracellular Hb, the Mb can be deoxygenated in vivo (121) and has an ~50-fold lower O2 affinity, resulting from a ~50-fold faster O2 dissociation rate (191), suggesting that the B10Tyr may not form a hydrogen bond with the bound O2 in this case.
The finding of a globin gene in the genome of Caenorhabditis elegans (514), a small (~1 mm) free living nematode not hitherto suspected of having a Hb because of a very low level of expression (302, 364), suggests that all nematodes may have globin genes. Despite substantial homology with the Ascaris Hb and Mb, it does not have a high O2 affinity. There is some indication of the presence of an extracellular Hb as well (198).
Considerable evidence suggests a physiological role for nematode Mbs. Model analyses (203) indicate significant facilitation of O2 diffusion by Ascaris Mb at low environmental O2 tensions. In vivo deoxygenation of Ascaris Mb is accompanied by cessation of movement, indicating a role of the Mb in tissue O2 supply, possibly as an O2 store. A similar role was demonstrated for the Mb of the free-living nematode Enoplus brevis (33) and Nippostrongylus Mb (485). A comparative study of the feeding of two Enoplus species that share the same habitat of estuarine mud but differ in the possession of a pharyngeal Hb indicates that the presence of Hb permits grazing under conditions of low O2 tension (34). Moreover, the higher O2 affinities of the parasitic nematode Hbs than of the host Hbs (as in the turtle parasite Camallamus) (657) predicts O2 transfer from the host's circulation. The ingestion of host oxy-Hb, which occurs in Strongylus and Toxocara from horse and dog intestines (458), may provide a contributary source of molecular O2 (630).
B) OCULAR PHOTORECEPTOR HB. Among three general types of pigmented eye structure found in nematodes (70), adult females of the soil-dwelling nematode Mermis nigrescens have red anterior "chromotropes," whose dense pigment is not a photopigment but an oxyHb, with high O2 affinity that functions to shadow a photoreceptor (66, 67, 69, 71, 72). Burr, Moens, and colleagues (68) have determined the protein and gene structures of two related globins; both consist of 146 residues, with 84% identity and both have the distal E7Gln and B10Tyr. Although the two globins are expressed at low levels in the body wall tissue of Mermis, the eye globin accumulates to an extremely high concentration in the eye and epidermal cells of the head (67), similar to the accumulation of crystallins in the vertebrate eye. Mermis eye Hb is unique in forming true crystals and is the only known globin in eye cells.
5. Nemerteans
Hbs occur in the central nervous tissues of Amphiporus lactifloreus (603), Lineus lacteus, L. ruber, and L. viridis (605) and in the body wall and neural tissues of Cerebratulus lacteus that lives in subtidal and intertidal habitats (602). With only 109 amino acid residues, the Cerebratulus body wall and neural Hbs are the smallest known globins. The sequence alignment indicates that the A, B, and H helices are about one-half the typical length (602). In addition to the distal E7Gln found in all the protozoan and bacterial Hbs and many invertebrate Hbs, the unusual presence of E11Thr in Cerebratulus could help stabilize the heme complex as suggested by the much decreased rate of hemin loss from the Met form of the ValE11Thr sperm whale Mb mutant (223). This feature could explain the decreased susceptibility to autoxidation relative to the 116-residue Paramecium Hb (264, 588). Cerebratulus body wall and neural Hbs show different affinities (P50 = 4.1 and 2.9 Torr, respectively, at 15°C) and similar high cooperativities (n50 = 2.9) that allow unloading of most of their O2 at tensions close to their P50 (602). Decreasing cooperativity with increasing dilution and O2 saturation suggests deoxygenation-linked aggregation to dimers and perhaps tetramers, as seen in several other invertebrate Hbs (see sect. IIC1). Similar oxygenation characteristics obtained for the body wall Hb in vivo and in vitro indicate the absence of affinity modulators in the tissues (602).
6. Gastrotrichans
The Hb occurring in cells closely associated with nerve and muscle bodies of the small (50 × 600 µm) Neodasys from intertidal beaches exhibits a moderately high affinity (P50 between 0.4 and 1.5 Torr)(323) that appears to be tailored to provide an accessible O2 store (see sect. IIC4) under intermittent muscle and nerve activities (96).
7. Annelids
In contrast to human isoMbs, which exhibit similar oxygenation
properties (461), the body wall Mb of the polychaete
Arenicola marina consists of two major monomeric
electrophoretic components, MbI and MbII, that exhibit markedly
different O2 affinities (329, 644) (Table 2, tissue Hbs/Mbs, and Fig. 3).
This suggests that Mb-mediated transfer of O2 from the
vascular Hb to the mitochondrial combustion sites can occur over a
broader range of O2 tensions than with a single component
(644). At least two additional minor electrophoretic
components are also present (Weber, unpublished results). Primary
structure analyses (301) reveal that MbI consists of two
isoforms (Ia and Ib) and MbII of at least three major isoforms (IIa,
IIb, and IIc), each having 145 residues. It furthermore appears that a
single substitution (C6Asn
Asp) underlies the charge difference
responsible for the electrophoretic separation of MbI and MbII and that
the lower O2 affinity of MbII correlates with the
E6Ser
Pro substitution that changes the surroundings of the E helix
in the vicinity of the distal E7His residue in MbIb and the three MbII
components (301).
An in vivo functional differentiation between Arenicola isoMbs is witnessed by distinct, paramagnetically shifted 1H-NMR signals (that reflect the cellular oxygenation state of the muscle tissue) (330). The 1H-NMR signals indicate a critical intracellular PO2 value (below which cellular O2 consumption decreases significantly) of <1 Torr in Arenicola tissue and a much greater extracellular/intracellular PO2 gradient than in mammals [~140:1 and 15:1, respectively (331)]. The high affinities of Arenicola isoMbs I and II (0.2 and 0.6 Torr, respectively, at 15°C, and 0.31 and 0.69 Torr at 20°C) (330, 630, and Weber, unpublished results) indicate extremely high O2 affinities in its cytochrome oxidase. In mammals, the affinity of isolated mitochondrial cytochrome oxidase far exceeds that of the Mb (P50 <0.2 and 2.3 Torr, respectively, at 37°C) (330, 415, 461).
The monomeric body wall Mbs from Abarenicola pacifica and Glycera robusta show lower O2 affinities (P50 = 2.5-2.8 Torr at 20°C) (179, 551, 552) compared with Arenicola marina body wall Mbs (above) and Glycera dibranchiata proboscis Mb (P50 = 0.5 Torr at 20°C) (557). Interestingly, a ~30-kDa dimeric Mb exhibiting marked cooperativity (n = 2.0, P50 = 0.4 Torr at 20°C) is found in the ophelid polychaete Travisia foetida (553).
The nerve Mb from the polychaete annelid Aphrodite aculeata exists as a homodimer in solution and has fast O2 association and dissociation rates and a ~2.5-fold lower O2 affinity than vertebrate Mb (Table 3) (135a, 660). The Mb has 150 residues, shows a 31-32% identity with the intracellular polymeric Hbs from the polychaete annelid Glycera, and has a normal rate of autoxidation (135a). Because of its abundance, it is likely to function as an O2 store, similar to the gastrotrich Neodasys (96).
8. Molluscs
A) MUSCLE MBS. I) Amphineurans. With the exception of Liolophuria japonica Mb that consists of three 17 kDa monomers (517), the radular Mbs of the primitive Amphineuran molluscs consist of both monomers and disulfide-bonded dimers (63, 445, 504, 558). The disulfide-linked dimeric Mbs of Amaurochiton glaucus and Sipharochiton pelliserpentis show distinct cooperativity (n ~1.4) (63, 504) (Table 2, tissue Hbs/Mbs).
II) Gastropods. Mbs have been isolated from some 37 species of Gastropods whose radular Mb concentrations may be two- to threefold that in human cardiac and skeletal muscles (445, 520). Gastropod Mbs exist as monomers (e.g., Aplysia and Dolabella Mbs) (515, 660) or cooperative dimers [e.g., Buccinum undatum (554) and Nassa mutabilis (99, 181)]. The distal E7 His is conserved in Neptuna, Busycon, Nassa, and Cerithedia Mbs but is replaced by valine in Aplysia, Dolabella, and Bursatella Mbs (372, 535).
Aplysia has hemocyanin as an extracellular O2 binding protein (183) in addition to the Mb that occurs in the radular muscle and the triturating stomach at concentrations comparable to the Mb in mammalian muscle. The presence of a distal Val residue has been confirmed by its crystal structure (51). Shikama and Matsuoka (489) have investigated the spectroscopic properties of a number of Mbs finding that the extinction characteristics of the Soret peak provide a useful criterion for predicting substitution of the distal His residues.
Homodimeric Mbs in the muscle cells of the several gastropod sea snails of the prosobranchia subclass have been characterized. Although the Mbs of Busycon canaliculatum and Cerithidea rhizophorarum do not exhibit cooperativity in their O2 binding (478, 535), Nassa mutabilis Mb has a P50 of 5 Torr and a n50 of 1.5 (181). Curiously, the Nassa Mb sequence has a high percent identity to the other two, 63% with Busycon and 46% with Cerithidea Mb (421). Recent investigations of the mechanism of O2 binding by Coletta et al. (99) have shown it to be quite different from that of Scapharca homodimeric Hb; its kinetic behavior is different, and the control of cooperativity appears to be exerted predominantly through the ligand-linked variation of the ligand association rates.
In contrast to other molluscan Mbs that lack allosteric modulation (e.g., by hydrogen ions, CO2, etc.) (558), NaCl increases the O2 affinity of Bucinum undulatum Mb (555). The biological significance of a higher O2 affinity in polyhaline environments (if any) is not clear.
Although molluscan Mbs exhibit some electrophoretic heterogeneity, two dimers in the gastropod Nassa mutabilis (181), and two monomers in the clam Mercenaria mercenaria (315), functional differentiation between the isoMbs has not been established.
B) EVOLUTION OF MB FUNCTION FROM INDOLEAMINE DIOXYGENASE. In 1989, Suzuki and co-workers (525, 531) found a 41-kDa Mb in the buccal mass of the gastropod Sulculus diversicolor (abalone) whose sequence had no significant similarity to Hbs and Mbs but showed 35% identity to the vertebrate heme-containing, tryptophan-degrading enzyme, indoleamine dioxygenase (IDO). The distribution of the IDO-like Mb was found to be surprisingly wide; it occurs in the gastropod molluscs Nordotis madaka (516), Omphalius (291), Turbo (521), and Chlorostoma (520). Although IDO forms an unstable oxygenated reaction intermediate and cannot serve as an O2 carrier, Sulculus Mb binds O2 reversibly, with a lower affinity than vertebrate Mbs (P50 = 3.8 Torr at 20°C) and no cooperativity or Bohr effect. It also does not have any IDO enzymatic activity. Thus it appears that the IDO-like Mbs represent a case of functional convergence (520, 531). The recent finding of NO dioxygenase activity of yeast and bacterial FHbs (see sect. IIIA1) emphasizes the close link between Hbs and dioxygenases.
C) BIVALVE GILL HBS. Cytoplasmic Hbs occur in the gills of symbiont-harboring clams from the families Solemyidae, Lucinidae, and Vesicomyidae, in the mussel Bathymodiolus (Mytilidae), and in the deep-sea gastropod Alviniconcha (667). These Hbs bind O2 and sulfide, are an almost ubiquitous feature of the symbiosis between molluscs and chemoautotrophic bacteria, and may play a role similar to the Hbs of nitrogen-fixing plants (666). Their reactions with sulfide are discussed in section VB.
In the Puerto Rican clam Lucina pectinata where individual
isoHbs appear specialized to supply either O2 or sulfide
for metabolism (see sect. VB), Hbs I, II, and
III bind O2 uncooperatively and with similar, very high
affinities (P50 ~0.1-0.2 Torr at 20°C) (324) (Table 2, tissue Hbs/Mbs). Whereas HbI
invariably appears to be monomeric, concentrated equimolar mixture of
Hbs II and III associate, indicating the existence of noninteractive
(HbII)2 (HbIII)2 tetramers in the tissues
(324). In the clam Myrtea spinifera, a
homodimeric Hb and a fraction containing three Hb subunits isolated from symbiont-harboring gills both bind O2 with
pronounced cooperativity (n = 2),
whereas sulfide appears to bind to a non-Hb protein present in the
gills (113). The Hb of the clam Solemya
reidi comprises three components with high O2
affinities (P50 = 0.3-0.5 Torr at pH 7.5 and
20°C) and similar O2 dissociation rates (~10
s
1 at 10°C) (321). While slightly
increasing the O2 dissociation rate of HbI, sulfide
drastically decreases the dissociation rates of HbII and HbIII,
suggesting that sulfide itself or a rapidly formed oxidation product
may be a factor controlling O2 delivery (321).
D) NERVE HBS. The maintenance of ion gradients in nervous tissue requires aerobic metabolism and ready availability of O2. The role of Hb found in the nervous systems appears to be well documented in a few bivalve molluscs (144). In Tellina alternata, nerve action potential conduction ceases when the Hb is deoxygenated under anoxia (319), and in Spisula solidissima and Tellina alternata, the O2 consumption rates of Hb-rich cerebrovisceral connectives closely match the rates of O2 unloading from Hb in situ (320). The Hb in nervous tissues appears to be situated largely in glial cells (and is absent in the neurons in the bivalve Telina alternata Hb), thus providing a possible O2 store for use by the neurons (144). For homodimeric Hbs of Tellina alternata and Spisula solidissima, in situ measurements on the cerebrovisceral connectives indicate P50 values of 1.3 and 2.3 Torr, respectively. These data indicate marked cooperativities (n = 3.7 and 2.1), which appear to ensure constancy in the rates of O2 unloading from the neural Hbs during hypoxic conditions (144, 319).
Among gastropods, nerve Hbs occur only in glial cells in Limnaea stagnalis and Planorbis corneus and only in the neurons in Helix pomatia and Cepaea nemoralis (475). Aplysia neural Hb occurs particle bound at high concentration and has been suggested to have a photoreceptive function (80). O2 storage in glial cells has been reviewed by Wittenberg (664).
9. Arthropods
Hbs occur sporadically in insect tissues, including specialized "tracheal" (fat body) cells, the parietal musculature and hypodermis of larval horse botfly Gastrophilus intestinalis (294), and tracheal/fat-body cells of backswimming insects like Buenoa confusa (40), Anisops pellucens, and A. assimilis (385, 652). Globin synthesis in Buenoa occurs in fat-body cells (40), as in the case of the extracellular chironomid Hbs (584).
The dimeric (34 kDa) Gastrophilus Hb occurs in at least two isoforms (2, 135). The Hbs from Buenoa and Anisops appear to consist of three fractions and exhibit an oxygenation-linked dissociation: the deoxy form occurs in a complex association-dissociation equilibrium ranging from ~17-kDa monomers to ~112-kDa hexamers, while the oxyHb is predominantly monomeric (40, 652).
In contrast to the moderately high O2 affinity of Gastrophilus Hb (P50 = 4.9 Torr, n = 1.0) (294), Anisops assimilis Hb has a low affinity (P50 ~40 Torr) and exhibits heterophasic cooperativity. It has very high cooperativity (n50 ~ 5.2) (Table 2, tissue Hbs/Mbs) at concentrations (~20 mM heme) resembling those in the living cells (652) and strongly increased O2 affinity and reduced cooperativity at low Hb concentration, indicating ligand-linked dissociation. In life, Anisops Hb appears to release O2 into the tracheal system during dives, thus lowering the depletion rate of the gaseous store used for maintaining neutral or positive buoyancy. Accordingly, mean dive durations in Anisops fall drastically in the presence of CO (385, 386, 652).
In addition to extracellular Hbs found in hemolymph of their larval stages (discussed in sect. IIIC1), the ovaries and eggs of chironomid insects have three and four Hbs, respectively, that appear to be cytochemically similar to the hemolymph Hbs. Together with the decrease in egg Hbs during development, this indicates that hemolymph Hbs taken up and stored in the developing oocytes may serve a nutritional function during embryogenesis (584).
The heme proteins occurring in the saliva of the blood-sucking hemipteran beetle Rhodnius prolixus and the bedbug Cimex and perhaps also those observed in eggs of the louse Pediculus humanus, which had been thought to be Hbs (418), are vasodilatory nitrophorins that act as a store and transporter of NO (622).
A very unexpected recent development was the identification by Hankeln and his collaborators of a 153-amino acid globin in the genome of the dipteran Drosophila melanogaster (65a). The sequence shows identities of 39% with Gastrophilus Hb (135) and 29% with Chironomus HbVI (135, 204).
10. Cephalochordates
Within the phylum Chordata, members of the subphyla Urochordata and Cephalochordata share a common ancestry with the members of the third subphylum Vertebrata (591); unlike the latter, however, they appeared to have no Hb. However, a ~38-kDa cytoplasmic Hb was recently isolated from the notochord cells of the amphioxus Branchiostoma (42). Its high O2 affinity (P50 = 0.27 Torr) and absence of cooperativity (42) indicate a possible role in facilitating diffusion of O2 into the notochord cells (668).
B. RBC Hbs
1. General features
Nucleated RBCs circulating in body fluids are encountered in six
invertebrate phyla: Phoronida (apparently in all species), Annelida (in
5 polychaete families), Nemertina, Echiura, Mollusca (in 2 classes,
Bivalvia and the primitive Solenogastres), and Echinodermata (in 1 of
the 3 orders of the Ophiuroidea and 2 of the 6 orders of Holothuroidea)
(355). Implicit scenarios are that RBCs either evolved
once before differentiation into phyla or that they arose separately on
several different occasions. In striking contrast to vertebrates, the invertebrate RBCs are
nucleated and mostly extravascular, commonly occurring in coelomic fluid. Exceptions are the phoronids where the RBCs circulate in a
closed vascular system (180) and nemerteans where they are found in at least partially closed circulations equipped with pulsatile
vessels and valves to direct flow (95, 355,
377). The extravascular location of invertebrate RBCs may
be due to their higher viscosity relative to an equimolar extracellular Hb solution, which would be disadvantageous in a closed cardiovascular system with a relatively weak heart (351,
356, 505). Interestingly, RBCs are totally
lacking in arthropods. Although the invertebrate RBC Hbs generally having low molecular masses
(~17 kDa), some exhibit moderate aggregation. Their O2
binding affinities are moderately high but lower than those of the
cytoplasmic Hbs; they exhibit low cooperativities (in accordance with
the small number of interacting hemes per molecule), small Bohr
effects, and insignificant sensitivity to allosteric effectors like
NaCl and organic phosphates (356). 2. Phoronids
The phoronids live in intertidal and subtidal sediments and have
RBCs, which circulate in the blood vascular fluids, in contrast to
other invertebrates. The vessels penetrate contractile tentacles that
function as hearts and are bathed by RBC-free coelomic fluid, indicating a blood-to-coelomic fluid O2 transfer
(149). The two species, Phoronopsis viridis
(180) and Phoronis architecta
(600), that have been investigated each have four unique
globin chains, two of which are monomeric and two associate at least to
dimers. The Hb also functions as an O2 store [lasting
~15 min (600)]. Phoronis architecta Hb shows
higher in cellulo than in vitro O2 affinity
(P50 = 1.3 and 0.7 Torr at 20°C, respectively) and
substantial cooperativity (n = 2.7 and 2.8, respectively) (600). 3. Annelids
A) FUNCTIONAL PROPERTIES. Among annelids,
RBCs appear to be restricted to the polychaetes where they are
encountered in the familes Capitellidae, Glyceridae, Ophelidae,
Terebellidae, and Scalibregmidae. In some polychaetes like the
glycerids, coelomic RBCs circulate through gills without
significant mixing of oxy- and deoxygenated cells, and through the
coelome by body wall contractions that also ventilate the burrow
(353, 354). In others, like the terebellids
Amphitrite ornate and Pista pacific, RBC-rich
coelomic fluid bathes branchial efferent blood vessels that carry
extracellular Hbs (351, 362), allowing for
intersite (blood to coelome) O2 transfer (547,
642). Annelid RBC Hbs may be monomeric (terebellids), dimeric (capitellids
and ophelids), tetrameric (Glycera robusta and
Scalibregmidae), or occur in combinations of different aggregational
states (354, 630). The organic phosphates ATP and 2,3-diphosphoglycerate (DPG) that
depress Hb O2 affinity in vertebrate RBCs do not exert
physiologically significant allosteric effects on annelid RBC Hbs (cf.
Refs. 224, 354, 362, 551, 635, 642, 645). Minor effects observed in the
predominantly tetrameric Glycera gigantea Hb
(P50 changes <1-2 Torr) (628) may represent
nonspecific electrostatic interactions, similar to those observed with
NaCl and invertebrate Mbs (555). The monomeric Hbs of the terebellids Enoplobranchus
sanguineus and Amphitrite ornata, which live side by
side in O2-depleted muds, differ in their O2
affinities, P50 = 1.4 and 2.8 Torr,
respectively (642). The higher affinity of the former
species, which lacks a vascular system and has short unbranched
parapodial gills, correlates with lesser anatomical differentiation
compared with the latter species, which has highly developed gills and
vascular Hb (362). Both the RBC Hb and the Mb from the
ophelid Travisia foetida are dimeric and exhibit pronounced
cooperativity (n = 1.8-2.0) in their O2
binding (553). Compared with the small variation in RBC O2 affinities observed with other annelids (<4 Torr),
the closely related capitellid genera Capitella and
Capitomastus show large affinity differences (9 Torr) that
may be related to differences in thermal environmental conditions
(355). B) EXCEPTIONAL HETEROGENEITY OF GLYCERA HB
STRUCTURES. Although pronounced Hb heterogeneity and
polymorphism is common among nonvertebrate Hbs, it has been documented
most extensively in two cases: the RBC Hbs of the polychaete G. dibranchiata and the extracellular Hbs from Chironomus
thummi larva. In addition to heterogeneity, glycerid Hbs show a striking variation in
quaternary structure. Although the Hb of Glycera robusta is
tetrameric (552), those of G. gigantea,
G. rouxii, and G. americana have a major
tetrameric fraction and a smaller dimeric or monomeric fraction
(635, 638, 645). G. dibranchiata RBCs contain a monomeric as well as polydisperse
polymeric Hbs (236, 357, 612,
645), both forms consisting of 17-kDa chains
(612). The monomeric Hb has a slightly higher
O2 binding affinity than the polymeric Hb (P50 = 4-6 vs. 9-11 Torr) and lacks cooperativity, whereas the
polymeric Hb shows small cooperativity that appears to be due to
reversible oxygenation-linked alterations in aggregation (56, 391). The two Hbs are synthesized in
comparable amounts (483) and were found to consist each of
at least half a dozen components (101, 285,
684, 685). The sequences of G. dibranchiata Hbs have shown that while
the polymer Hbs have the normal distal E7His (684,
685), the monomeric Hbs have a distal Leu (6,
261, 566) whose presence has been verified by
high-resolution crystal structure studies of a monomeric Hb
(23, 60). The crystal structure shows the typical globin "fold" with no D helix and the heme inserted in the
reverse orientation compared with vertebrate hemes, as was observed in
Chironomus Hb (511). A recent electrospray
ionization mass spectrometric (ESI-MS) study of the
Glycera pooled Hbs has shown at least 18 peaks attributable
to monomer Hbs (14,500-15,200 Da) and an approximately equal number of
polymer Hbs (15,500-16,400 Da) (212). Blood from
individual worms had generally fewer than six monomer and six polymer
components; in a couple of cases there was a complete absence of
polymeric Hb. Taking into account possible fragmentations of the known
globin sequences, a conservative estimate of the number of different
monomeric and polymeric Hbs is about 10 each. 4. Nemerteans
The properties of RBC Hbs found in (partially) closed circulatory
systems of at least four genera of nemerteans (355,
606) appear not to have been studied. 5. Echiuroids
The echiuroids are phylogenetically close to annelids
(376). Although they have a closed circulatory system,
there are no respiratory proteins in the blood, and Hb is found in
coelomic cells, coelomic epithelium, body wall muscles, and nerve cord (546). The inter- and subtidal "fat innkeeper worm"
Urechis caupo has abundant Hb-containing cells in the
coelomic fluid, which has 1.6-5.0 g Hb/100 ml and an
oxygen-carrying capacity of 27-72 ml/l (446). The
Hb-containing cells function to transport O2 to the Mb
in the muscles used in burrow ventilations, since the Mb has a higher
O2 affinity than the Hb (439,
446). The Hb is tetrameric and comprises one major
fraction (F-I), which consists of identical chains and two minor ones
(F-II and F-III), both of which are heterogeneous, with at least least
five components (178). The homotetrameric Hb has a
moderate affinity (P50 = 12 Torr at 20°C), a very
small Bohr effect, and is noncooperative (178). Its
crystal structure showed the molecules to have an "inside-out"
quaternary structure with the G and H helices at the surface facing the
solvent, and tightly bound water molecules help mediate intersubunit
interactions (312, 313). Although this
structure is reminiscent of the structure found for the homodimeric HbI
of the clam Scapharca inaequivalvis (see sect.
IIIB6), the absence of cooperativity may result
from lack of contacts along the F helices, which together with
E-helical contacts mediate cooperativity between the closely packed
hemes in S. inaequivalvis Hb (463,
468). The only other echiuroid Hb investigated is that of
Thalassema (Lissomyema) mellita, which
inhabits the tests of dead sand dollars, Mellita pentapara.
It has three coelomic cell Hbs consisting of three globin chains; the
two major components are a homo- and a heterodimer, and the third is
monomeric, sharing a globin chain with the heterodimer
(619). All three isolated Hbs have a higher affinity
(P50 = 1-2 Torr) and lower cooperativity
(n50 = 1.0-1.3) than the coelomic cell suspension and
the lysates (P50 = 2.5-3.0 Torr and
n50 = 1.5-1.9) (619) (Table
2, RBC globins). 6. Molluscs
A) GENERAL MOLECULAR PROPERTIES. Arcid bivalve RBCs
commonly have dimeric Hbs. Noetia ponderosa has a major
heterodimer and a minor homodimer (165, 472).
Anadara and Scapharca have dimeric and tetrameric
Hbs (58, 85, 143,
409, 463). In Anadara broughtonii,
A. ovalis, and Scapharca inaequivalvis, HbI is
homodimeric ( The arcid clam Barbatia reeveana is unique in having a
~430-kDa polymeric Hb in addition to a tetrameric one
(214). Furthermore, the former is a dodecamer of
two-domain, ~35-kDa subunits, and its state of aggregation is not
affected by ligand binding (215). It is the largest known
intracellular Hb. The two domains show ~80% identity; the
corresponding globin gene has two novel introns, a "precoding"
intron and a "bridge" intron that separates the two domains
(397). Suzuki et al. (522) have determined
the sequences of the Hbs from several other Barbatia
species. B. virescens has a heterodimeric Hb in addition to
the polymer, while two subspecies of B. lima differ in their
Hb contents: one has only a B) O2 binding. Bivalve RBC Hbs generally have
lower O2 affinities (P50 = 8-17 Torr at
20°C) (558) than stripped vertebrate Hbs. The affinities
of dimeric isoHbs exceed those of the tetrameric ones (Table 2,
RBC globins); both dimers and tetramers exhibit cooperativity (n50 = 1.5-1.8 and 1.6-3.0,
respectively) and small or no Bohr effects (463,
558). Despite the absence of Bohr effects in A. broughtonii Hbs I and II, their circular dichroism
spectra and the reactions with ligands indicate the occurrence of an
R In Noetia ponderosa, the major, heterodimeric and minor,
homodimeric Hbs that have different affinities (P50 = 16.8 and 8.7 Torr, respectively, at pH 7 and 25°C) (Table 2,
RBC globins) do not form larger complexes upon deoxygenation
(472). The polymeric and tetrameric Hbs of Barbatia
reeveana have remarkably low affinities (P50 = 33 and 19 Torr, respectively, at 20°C) with substantial cooperativities
(n50 = 1.8 and 2.2, respectively) and no
Bohr effects (214, 215). Because bivalve Hbs
have lower affinities than Mbs in juxtaposed tissues (see below),
O2 transfer from RBC to Mb may occur. Data in the literature indicate widespread structural and functional
polymorphism in bivalve RBC Hbs. Whereas Hb from Noetia ponderosa
found in Virginia (United States of America) is an
electrophoretically single dimer, the Hbs from Noetia found
in the Gulf of Mexico exist as homo- as well as heterodimers and
exhibit lower O2 affinities (P50 = ~5
and ~7.5 Torr, respectively) (358). Again, although the
tetrameric component of Anadara trapezia Hb is invariant, the dimeric Hb occurs as one of two homozygotes or as a heterozygote that shows a geographical cline from low to high frequency over ~1,000 km of the southeastern Australian coastline (408a). A low temperature dependence of O2 affinity, that will
safeguard O2 loading at high temperatures, has been
reported in several bivalve RBC Hbs. Compared with Mbs ( No information appears to be available on functional and allosteric
properties of Hbs from solenogaster molluscs. C) NOVEL MECHANISM OF COOPERATIVITY IN SCAPHARCA
HOMODIMERIC HB. The homodimeric HbI and
heterotetrameric HbII of the bivalve lamellibranch Scapharca
inaequivalvis have different functional properties. HbI has a
constant O2 affinity (P50 = 7.8 Torr) over the pH range 5.5-9.5 and a cooperativity (n50 = 1.5) that is high for a dimer. HbII has a lower affinity
(P50 = 9.1 Torr), which increases at low pH due to an
acid Bohr effect, where protons are bound preferentially to the oxy
state. Its higher cooperativity (n50 = 2.0)
is, however, moderate for a tetramer (85). Although HbI
does not alter its association state upon deoxygenation over the pH
range 6-9, the tetrameric HbII appears to establish an association-dissociation equilibrium between tetramers and polymers higher than octamer upon deoxygenation (85). Neither of
the two Hbs release protons upon oxygenation, i.e., lack the normal Bohr effect, and the enthalpy and entropy changes are nonuniform with
respect to the oxygenation steps, two for the dimer and four for the
tetramer (249). The crystal structures of the dimeric HbI
and tetrameric HbII obtained by Royer et al. (466,
467) reveal a conserved Mb fold, the presence of a
six-residue NH2-terminal helix and the absence of a D
helix. Significantly, the Hbs show a distinctly different quaternary
structural arrangement in that the heme-bearing E and F helices
(that are solvent-exposed in mammalian Hbs) face each other in
close proximity. Although large alterations in tertiary structure
attend ligand binding, the changes in quaternary structure are small.
The O2 affinity of each subunit appears to be determined by
the position of the Phe97 side chain, which is located within the
proximal moiety of the heme cavity. Its expulsion into the interface
between the two subunits upon ligand binding leads to alterations in
the interactions between the two hemes and the residues in the heme
cavity providing the functional linkage for direct heme-heme
communication (86, 462). The
high-resolution crystal structures of CO HbI and its deoxy form
determined by Royer et al. (464, 469) showed
that the movement of the two Phe residues in turn displaces 6 of the 17 well-ordered water molecules forming a cluster in the interface
between the two subunits of the homodimer. Interestingly, like human
Hb, the deoxyHbI is more tightly associated than the liganded state,
and subunit dissociation leads to increase in O2 affinity
(465). The small alterations in the homodimer structure
upon ligand binding are consonant with the retention of the
cooperativity of O2 binding in the crystal
(395). Chiancone and co-workers (47,
118) have studied in great detail the structural and
functional properties of the various forms of Scapharca HbI.
Mutation of the distal His to Val increases ligand affinity and
abolishes cooperativity (217). Likewise, mutation of
Thr72, whose hydroxyl group forms a hydrogen bond to the intersubunit
water cluster, results in 40-fold reduction in O2 affinity
and substantial loss of cooperativity (420). 7. Echinoderms
Hb occurs in Ophiuroidea and Holothuroidea. In the holothurians
(sea cucumbers), RBCs may be found in one, two, or each of the fluid
compartments, the coelomic, water vascular, and hemal systems, of which
only the last-mentioned exhibits clearly unidirectional flow, and
appear to pass freely between these systems (356). Very
little is known about Ophiuroid Hbs. Hemipholis elongata Hb
consists of a major monomeric and a minor dimeric form and is almost
fully oxygenated at 9 Torr (219). Holothurian Hbs from Cucumaria miniata and Caudina
(Molpadia) arenicola are dimeric in oxygenated state and aggregate
to predominantly tetrameric forms upon deoxygenation (54,
56, 548). The four major globin chains
A-D of Caudina arenicola RBC Hb assemble into seven
different homo- and heterodimeric forms (374). The single chains exhibit slight but measurable cooperativity and high affinity (P50 = 2-3 Torr). Affinity falls and cooperativity
increases markedly when the D chain is added to any of the other three
chains (300). The atomic structures of the cyan-Met derivative of the dimeric HbD
of Caudina arenicola (390) resemble the
structure of Scapharca inequivalvis homodimeric HbI
(466) despite only 22% amino acid identity. Although this
suggests a mechanism for cooperativity similar to that in
Scapharca HbI, the intersubunit contact regions in
Caudina Hb lack the key residues implicated in the
Scapharca mechanism (300). C. Extracellular Hbs
These Hbs are invariably synthesized intracellularly and are then
secreted; they occur in solution in the hemolymph of six "protosome" invertebrate phyla (Annelida, Vestimentifera,
Pogonophora, Nematoda, Arthropoda, and Mollusca) (541,
578). Because they lack the cellular microenvironment
where effector levels may be regulated as in vertebrates, their
operating conditions are more dependent on the vagaries of ambient
conditions than the Hbs enclosed in ionoregulating cells. The extracellular occurrence of Hbs is predicated on their large
molecular size that prevents excretory loss through membranes. An
exception is the Hb from chironomid (insect) larvae that consists of
mono- and dimers. We postulate that these small structures may be
permitted by the possession of Malpighian tubules as excretory organs
in insects, instead of filtration-reabsorption type
nephridia/kidneys found in other invertebrates that would result in
loss of freely dissolved globins. Chironomid Malpighian tubules
moreover appear to be specialized for the breakdown of Hb and release
of the catabolic products (268). The correlation between
extracellular location and absence of filtration-type excretory
organs appears to extend to the giant, ~3,600 kDa extracellular, HBL
Hbs of annelids. These Hbs are intravascular, with exception of
nephthyd polychaetes where Hb also occurs freely dissolved in the
coelomic fluid and the excretory organs are pronephridia rather than
nephridial coelomoducts (626, 629). No
information appears to be available on the excretory organs of the
deep-sea, hydrothermal vent polynoid polychaete Branchipolynoe, which contains ~124- and ~153-kDa Hbs
freely dissolved in the coelomic fluid (243). 1. Chironomids
A) EXCEPTIONAL HETEROGENEITY OF HBS. The
Chironomidae represent one of the largest insect families with Chironomid Hbs appear to fulfill clear physiological roles of
transporting and storing O2 in the larvae that burrow in
polluted and hypoxic muds (418, 623, 624) and
to be important in the absorption of O2 from ambient water
at partial O2 pressures ranging from 10 to 50 Torr (see
Fig. 2 and sects. IIA and
IIC4). Their Hbs allow the larvae to maintain
aerobic metabolism under hypoxic conditions (693). A
possible but undefined role has been proposed for them in the
metabolism of xenobiotics in the frequently polluted, hypoxic
environments in which Chironomus flourish
(418). Braunitzer and co-workers (204) isolated, identified,
and sequenced 12 different Hbs from the hemolymph of Chironomus
thummi thummi (CTT) in the 1970s; five were found to exist as
monomers, six as homodimers, and one in a monomer-dimer equilibrium
(204). The monomer Hb CTT-III was the first
invertebrate Hb whose high-resolution crystal structure was
determined (247, 511). In the crystal structure the heme group is rotated by 180°, and the heme cavity in
the deoxy form has an unusual open gate conformation with the distal
HisE7 able to swing out of the cavity (511). This Hb has been the subject of numerous thermodynamic, kinetic, and spectroscopic studies (138, 470). A recent ESI-MS study of the Hb from the fourth instar larvae
demonstrated the presence of more than 20 components ranging in mass
from 14,417.3 to 17,356.5 Da (209a). Studies of globin gene sequences in several Chironomus species carried out in
the laboratories of Schmidt and Bergtrom have indicated that their number is likely to be >40 (216, 220,
221, 287, 288). All but one of
the 15 major components observed by ESI-MS could be assigned to
known genomic sequences; it appears therefore that not all of the
globin genes are expressed in the fourth instar larvae of
Chironomus. The Hb from the Japanese midge Tokunagayusurika akamussi
consists of at least 11 components (168), which fall into
two approximately equal groups, one having a distal His (N type) and
the other a distal Leu (L type). The former has a higher percent of
identity (40-48%) with the Chironomus Hb sequences than
the latter (26-27%), since all the Chironomus Hbs have a
distal His. The L-type Hb has an O2 affinity comparable
to mammalian Mbs and exhibits a Bohr effect. Spectroscopic studies
indicate this Hb to have a unique structure in the distal heme
cavity (5, 317). The pronounced heterogeneity characterizing chironomid Hbs may be
adaptive to exogenous and endogenous factors. In CTT, the relative
contribution of dimeric Hbs is markedly (~70%) higher in summer
larvae than in the spring larvae (344), and in C. tentans, the isoHbs patterns reveal selective expression of
individual globins during larval development (568).
Although C. thummi Hbs are monomeric and dimeric, C. tentans Hbs are exclusively monomeric and show no evidence of
subunit aggregation (567). C. plumosus Hb is
predominantly dimeric (532), and C. strenzkei
Hb is tetrameric (495). Comparison of amino acid sequences
and antibody cross reactions indicate that the mono- and dimeric Hbs
originated from a common ancestor that diverged near the base of
chironomid evolution and that present-day insect taxa lacking Hb
might contain unexpressed globin pseudogenes (204,
572). Whereas C. pallidivittatus and C. tentans express at least 8 and 10 electrophoretic components, respectively, hybrids of these species inherit Hb patterns of both
parents (571). Bergtrom and collaborators
(288) have proposed that an increased number of globin
genes has been positively selected as a mechanism to achieve the high
Hb concentration presumed to be desirable for survival of the larvae. B) O2-binding properties. C. thummi
isoHbs bind O2 noncooperatively with high affinity
(P50 at 20°C, pH 7 = 0.4-1.3 Torr for monomeric Hbs I, III, and IV and 0.3-0.7 Torr for dimeric Hbs II , VI,
VIIB, IX, and X), with varying pH sensitivity ( The occurrence of a Bohr effect in a monomeric Hb is unusual. The Bohr
effect expressed in monomeric Chironomus Hb may be controlled by a single O2-linked proton dissociating group
(470, 495) that has been assigned by NMR to
be the HisG2. In C. thummi Hb III and IV at low pH, this
residue forms a salt bridge with the COOH-terminal carboxyl group
of MetH22 that stabilizes the low ligand affinity state
(470). In HbIII, where the heme can assume two distinct
orientations, heme orientation transitions occur in the same region as
the conformational changes responsible for the Bohr effect
(138, 338), and the Bohr effect is solely attributable to the pH dependence of O2 dissociation rates
(182). 2. Two-domain nematode Hbs
The pseudocoelomic (perivascular) Hb of Ascaris is a
very abundant protein; it is developmentally regulated upon entry into the intestines of its host the pig and is more abundant in the larger
females (44). The Hb is a ~350-kDa octamer of
two-domain globin chains. The sequences of the pseudocoelomic Hbs
from Ascaris (125, 487) and the
closely related Pseudoterranova decipiens (142) have been determined. Substantial evidence supports
a model of the quaternary structure of Ascaris Hb to consist
of two layers, each of four two-domain subunits stacked in an
eclipsed orientation (i.e., with the upper and lower layers directly
superimposed) (116, 117) as earlier suggested
for Parascaris equorum Hb (587) (Fig. 1).
Nematode Hbs appear to be highly antigenic: both
Trichostrongylus and Pseudoterranova Hb were
found as the result of a search for immunogenic parasite proteins in
sheep and gray seal, respectively (142, 166). The tandem globin domains have a unique COOH-terminal polar zipper
region, which was proposed to be responsible for the oligomerization (125, 430). Goldberg and collaborators
(388, 389) have confirmed this hypothesis by
showing that the expressed COOH-terminal domain but not the
NH2-terminal domain could form an octamer. Furthermore, they established the COOH-terminal tail to be necessary but not sufficient for octamer formation and that it plays no role in the
stabilization of the oligomeric structure; rather, it functions as an
intramolecular chaperone promoting the octamer assembly (387). The pseudocoelomic Ascaris Hb has one of the highest known
O2 affinities (P50 = 0.001-0.004 Torr at
20°C; Table 2, extracellular Hbs; Fig. 3). Its affinity
for O2 exceeds that for CO (P50 = 1 Torr),
resulting in an extremely low M value (0.036)
(412) and is ~10,000-fold higher than that of the host
Hb (Table 1). Studies of the kinetics of ligand binding of
Ascaris, Parascaris, and Pseudoterranova Hbs indicated that the high affinity is due
to an extraordinarily low rate of O2 dissociation
(100, 190, 191) (Table 3).
Furthermore, the O2 affinities of the individual domains were found to be identical to the affinity of the native Hb
(304). The crystal structures of individual domains show
that the unusual B10Tyr is within the distal heme cavity and that its
hydrogen bond to the bound O2, also hydrogen bonded to the
distal E7Gln, is probably responsible for the very slow O2
dissociation rate (126, 303,
679). In support of this concept, the mutation LeuB10Tyr abolished the high affinity (303). An engineered triple
mutant of sperm whale Mb (LeuB10 Several possible functions have been proposed for the high-affinity
pseudocoelomic Hb of Ascaris Hb. It could serve as an O2 scavenger or sink to prevent access of O2 to
the fully anaerobic mitochondrial oxidation pathway of
Ascaris (44), similar to the role played by
LegHbs in the nitrogen-fixing nodules of legumes, as a store of
heme to be supplied to the gonad from the gut, necessary because of the
inability to produce porphyrins for cytochromes endogenously, an enzyme
or enzyme cofactor carrier protein (502), and as a
catalyst in the first step of sterol synthesis (486). The
latter function was proposed based on the findings that the sterol
precursor squalene copurified with Ascaris Hb and that the
latter was capable of epoxidating the squalene via a linked reduction
of cytochrome c. The catalysis of the first step in sterol
synthesis would be an important function in providing essential membrane components necessary for the development of ascarid eggs (199). Very recent work by Goldberg and collaborators (388) has
demonstrated that the Ascaris perienteric fluid contains
endogenous S-nitrosothiol as the result of
S-nitrosylation of two of the three Cys residues (A7, E15,
and E19) conserved in each of the two domains of the Hb. Furthermore,
they found that 1) the Hb reacted directly with NO, the
extent of the reaction being approximately equivalent to the
concentration of the heme present; 2) the reaction was
10-fold more rapid in the presence of NADPH; 3) the Hb
exhibited intrinsic NADPH oxidase activity; and 4)
O2 was consumed by the Hb in the presence of NO at a ratio
of ~2 O2 per NO. The conclusion of this study is that
although the primary function of Ascaris Hb appears to be
O2 removal (388), it may also protect against NO normally present in the host gut. Ascaris Hb is thus
similar to the yeast and bacterial FHbs that also metabolize NO
(177, 226) but by a different mechanism.
Ascaris Hb structure and function was just reviewed by
Goldberg (199). 3. Giant HBL Hbs and Chls: summit of Hb complexity
A) MOLECULAR STRUCTURE. Hbs having a HBL structure
occur in terrestrial and freshwater oligochaetes, in the predominantly freshwater hirudineans (leeches), in marine polychaetes, and in vestimentiferans (339). Chls are essentially HBL Hbs with
an altered heme group (chlorocruoroheme) that has an aldehyde group instead of a vinyl group; they occur in four marine polychaete families: Sabellidae, Serpulidae, Chlorohaemidae, and Amphateridae (160, 541). The HBL Hbs are complexes of
globins and nonglobin, linker chains in an ~2:1 ratio, and represent
a summit of complexity for heme proteins binding O2
reversibly (339, 609). In the recently described deep-sea orbiniid polychaete Methanoaricia
dendrobranchiata living in association with mussel communities
from the Gulf of Mexico cold seeps, ~3,500 kDa HBL Hb occurs together
with a 210-kDa Hb (S. Hourdez, R. E. Weber, and C. R. Fisher,
unpublished data). Early electron microscopic studies of annelid extracellular Hbs
revealed them to consist of two superimposed layers of six pentagonally
shaped subassemblies, ~20 nm high and ~30 nm in diameter, surrounding a central cavity (455, 610). In
several cases, material was observed in the central cavity in the
marine polychaetes Oenone fulgida (598),
Nephtys incisa (381, 651),
Euzonus mucronata (565), and Ophelia
bicornis (77, 184) as well as in the
oligochaete Eophila tellini (78). Several
studies used small-angle X-ray scattering to investigate the molecular
shape and mass of HBL Hbs (381, 432a,
433a, 566a, 659b). Krebs et al.
(327) have reviewed the results obtained with Hb from the
oligochaete Lumbricus terrestris and compared them to those
obtained by electron microscopy. More recently, three-dimensional
reconstructions at ~3-nm resolution of Lumbricus Hb were
obtained by the groups of Van Heel and Lamy (128,
474) (Fig. 4). The
structures revealed no protein density in the central cavity and a
local threefold axis of symmetry was observed for each of the 12 subassemblies forming the 2 layers, and the latter were found to be
rotated by ~16° (128). Extensive additional work by
Lamy's group showed very similar quaternary structures for the Hbs
from the leech Macrobdella decora, the vestimentiferan
Riftia pachyptila, the deep-sea polychaete
Alvinella pompejana, and the Chl from Eudistylia
vancouverii (127, 129-131), except for the absence of rotation in A. pompejana Hb
(131). This observation was repeated in the latest
cryoelectron microscopic studies of several other polychaete Hbs,
notably that of Arenicola marina, suggesting that
polychaetes, including those inhabiting the deep-sea hydrothermal
vents but excluding the four families which contain Chl, have the HBL
structure with absence of rotation, and all the other annelids and
vestimentiferans have the rotated HBL structure (J.-C. Taveau and J. Lamy, unpublished data).
2) and HbII is tetrameric consisting of two
different subunits (
2
2), which is rare
among invertebrates (463). The tetrameric HbII of A. broughtonii polymerizes (mainly to dodecamers) upon deoxygenation
(169-171). The deep-sea, thermal vent clam species Calyptogena, the only heterodont clam with circulating RBCs,
also exhibits congeneric variation in its Hbs; although C. magnifica has a tetrameric Hb (560) that may exist in
three forms, viz.,
4,
2(
), and
(
)2 (691), C. soyoae has two
homodimeric Hbs (527).
2
2-tetramer, and the other has the tetramer, a homodimer (
2), and a
different type of polymeric ~290-kDa Hb comprising both
two-domain subunits as well as the
-chain (522).
The
-chain has 71-74% identity to the two domains and appears to
be their ancestral single-domain globin. Although the
O2 affinity and cooperativity of the B. reeveana tetramer are higher than that of the polymeric Hb (P50 = 19 Torr and n50 = 2.2 at 20°C
compared with 33 Torr and 1.8, respectively), both Hbs exhibit no Bohr
effect over the pH range 6.8-7.0 (215).
T transformation upon O2 binding. Thus the absence of
Bohr effects may be related to a lack of proton ionizing groups
(169-171). A. broughtonii and S. inequivalvis Hb tetramers polymerize to form larger complexes on
deoxygenation; in Scapharca inaequivalvis, the
polymerization is anion linked and decreases O2 affinity
(48, 85, 171). Unpublished
findings (R. E. Weber and J. S. Djangmah, unpublished data)
fail to confirm an earlier report of reverse Bohr effects in A. senilis Hbs (143).
H
~
55 to ~
68 kJ/mol) (12), the molluscan Hbs exhibit
low overall heats of oxygenation;
H is~
9 kJ/mol in Noetia
ponderosa (165) and
12 and
23 kJ/mol in the
polymeric and tetrameric Hbs, respectively, of Barbatia reeveana (215). Inverse temperature effects
(O2 affinities increasing with rising temperature) reported
to occur at temperatures above 20°C in three species of
Anadara (98) were not confirmed by measurements
with hemolysates of Anadara senilis that show a linear van't Hoff plots (
H =
35 kJ/mol between 5 and
30°C) (R. E. Weber and J. S. Djangmah, unpublished data).
Viewed in conjunction with the insensitivities of these Hbs to protons
and other effectors, which reduce the temperature effect through
endothermic dissociation of effectors upon oxygenation, the low
temperature effects suggest lower intrinsic heats of oxygenation in
bivalve Hbs than in other Hbs and Mbs.
10,000
species (37). They exhibit stage-specific and
tissue-specific single-chain globin synthesis throughout the four
larval and the pupal stages. The Hbs are synthesized in the larval fat
body and are then secreted into the hemolymph (41,
471). The Hbs have been found to be potent human allergens
(37).
= 0 to
0.37
for the monomeric Hbs and
0.50 to
0.94 for the dimeric Hbs) and
marked temperature sensitivities (
H =
40 to
80
kJ/mol) whose pH dependencies do not correlate uniformly with the
magnitudes of (endothermic) Bohr effects (637).
Tyr/ HisE7
Gln/ThrE10
Arg)
designed to mimic Ascaris Hb did not evince a comparable
O2 affinity (694).

View larger version (100K):
[in a new window]
Fig. 4.
Three-dimensional reconstruction at 22-Å resolution obtained
from frozen-hydrated specimen of Lumbricus terrestris
native hemoglobin. A: hexagonal (or top) view seen along the
6-fold axis. B: side view seen along one of the 2-fold axes.
C: intermediate view corresponding to a 45° rotation of
the molecule oriented as in A around a horizontal axis.
D: a section of the molecule oriented as in B
with the front half removed. (The frames were provided by Dr. J. Lamy,
Tours University, France.)
HBL Hbs have a sedimentation coefficient of ~60S, an acidic isoelectric point, and unusually low iron and heme contents corresponding to a stoichiometry of 1 mol heme/20-26 kDa (532, 610, 614). The latter property is accounted for by the presence of 16- to 17-kDa heme-bearing globins and 24- to 32-kDa heme-free "linker" chains in an ~7:3 mass ratio (339, 608).
The most extensively studied HBL Hb is that of the common earthworm Lumbricus terrestris. The Hb contains four major globin chains in equal proportions, with chains a, b, and c forming a disulfide-linked trimer subunit and chain d forming a monomer subunit (174, 494) that can easily be dissociated from the Hb at pH >8 (615, 616). Four groups of linker chains, L1-L4 have been identified by chromatography and ESI-MS (172, 370). On the basis of the finding of ~200-kDa globin subassemblies devoid of linker subunits, upon mild, partial dissociation of the Hb at neutral pH, a "bracelet" model of its quaternary structure was proposed to consist of 12, ~200-kDa globin subassemblies tethered to a central scaffolding of 24- to 32-kDa linker chains (611, 613). The globin subassembly was determined to be a dodecamer D [bac]3[d]3, consisting of three copies each of the trimer T (bac) and a monomer M (d), giving a composite M3T3 (613). Furthermore, an overall mass of 3.56 ± 0.13 MDa determined by scanning transmission electron microscopy (STEM) mass mapping and sedimentation equilibrium measurements was found to be compatible with either 36 or 42 linker chains forming the central scaffolding complex (370). The dodecamer subassembly is an obligate intermediate in both the dissociation of the HBL Hb structure as well as its reassembly (484). The essential correctness of the bracelet model was demonstrated by the recent three-dimensional reconstruction using cryoelectron microscopy of Lumbricus Hb (128, 474). The local 3-fold axis of symmetry present in every 1 of the 12 subassemblies forming the two layers is in agreement with the symmetry found for the dodecamer subassembly crystals (369) and expected on the basis of the M3T3 structure of the subassembly.
The presence of a dodecamer subassembly has been demonstrated in Eudistylia Chl (441) but not in the Hb of the leech Macrobdella decora (290). The latest three-dimensional reconstruction of Lumbricus Hb at 2.2-nm resolution by Taveau et al. (538) revealed all 144 globin chains organized into 12 dodecamer subassemblies and 42 linker subunits. At the same time, Green and co-workers (209) determined the masses of the isolated dodecamer subassemblies of Lumbricus and Arenicola Hbs by ESI-MS to be in excellent agreement with the calculated masses for M3T3. Furthermore, Green (personal communication) was also able to observe the dodecamer subassemblies directly by ESI-MS of Lumbricus and Arenicola Hbs at neutral pH. Finally, the just completed crystal structure of Lumbricus Hb at a resolution of 5.5 Å has confirmed all the features of the three-dimensional reconstructions obtained by cryoelectron microscopy (469a). The three-dimensional reconstructions obtained by Lamy's group imply that all HBL Hbs have the same quaternary structure, at least at low resolution. It is interesting to note that although all the structural results obtained so far point to a symmetric HBL structure, a recent determination of the dipole moments of Lumbricus Hb and its dodecamer subassembly found them to be 17,300 and 1,400 Da, respectively (536).
An alternative structure for the Lumbricus Hb and its globin subassembly was proposed by Riggs and collaborators. Based on trimer and monomer subunits isolated by dissociation of the Hb at alkaline pH and their reassociation at neutral pH, they have proposed the subassembly to be a hexadecamer of globin chains [abc]4[d]4 (419, 697, 698). According to their view, the native Hb thus consists of 12 [abc]4[d]4 units and 24 linker chains with a total calculated mass of 4,108 MDa. This value is an outlier compared with over a dozen masses for earthworm Hbs found in the literature obtained using a variety of experimental methods (339) whose overall mean of ~3.7 MDa is close to the value proposed by Martin et al. (370). The latest ESI-MS results and the three-dimensional reconstructions obtained by cryoelectron microscopy provide no support for the foregoing model.
B) GLOBIN AND LINKER AMINO ACID SEQUENCES. The first complete primary structure of a HBL Hb was provided by the sequences of the four globin and two linker chains of the Hb from the marine polychaete Tylorrhynchus heterochaetus determined by Suzuki, Gotoh, and co-workers (518, 526). The sequences of chains a, b, and c (174) and the two variants of chain d (350, 494, 675) of Lumbricus Hb have been determined. These globin sequences and an additional dozen or more from other HBL Hbs align well with each other and vertebrate globin sequences (289, 394, 618). Furthermore, they can be separated into two distinct groups (207, 208, 492, 493).
The linker subunits are necessary for HBL formation (206, 335, 698). The amino acid sequences of linkers from several HBL Hbs have been determined (523, 524, 526). All the linker chains have a single 42-residue cysteine-rich domain (CRD) in the NH2-terminal moiety. This domain contains six disulfide-bonded Cys residues similar to the CRDs found in members of the scavenger receptor cysteine-rich superfamily including the low-density lipoprotein (LDL) receptor protein family and other diverse proteins. The structure of the ligand-binding CRD out of the seven CRDs found in LDL receptor protein has been determined (43, 156); it requires Ca2+ for folding and has a high Ca2+ affinity, ~70 nM. The latter property is likely shared by all HBL Hb linkers, thus explaining the universal stabilization of the HBL structure by Ca2+ and its requirement for reassembly (335). A recent study of Lumbricus HBL structure reassembly (from dodecamers and individual linkers as well as various combinations of linkers) has shown that the four types of linkers are structurally interchangeable (335). Furthermore, this study showed that the presence of at least 1 mM Ca2+ is necessary for HBL reassembly to produce its maximum yield, in agreement with earlier observations obtained with Glossoscolex Hb (52). In most of the known HBL Hbs, the globin subassemblies are noncovalent complexes of monomeric and disulfide-bonded subunits forming a noncovalent complex with linker subunits, which in some cases are themselves disulfide bonded. In Nephtys Hb, however, all the subunits, globin and linker, are disulfide-bonded to each other (617).
Over the last several years, maximum entropy deconvolution of the ESI-MS of several HBL Hbs by Green and co-workers has provided detailed enumerations of the globin and linker chains as well as disulfide-bonded subunits, with masses known to ±1-3 Da over the mass range 17-50 kDa. In addition to verifying the masses calculated from the known sequences, this method provides the number of free and disulfide-bonded Cys residues as well as an indication of posttranslational modification, such as glycosylation. The ESI-MS of the Hbs from Lumbricus (370), Macrobdella (641), Riftia (688), Alvinella (686), other deep-sea alvinellids (687a), Arenicola (687), Tylorrhynchus (213), and Haemopis (210) and the Chl from Eudistylia (211) showed that in addition to monomeric globins there was a broad variation in the type of disulfide-bonded subunits present. Thus, while Lumbricus, Alvinella, Arenicola, and Tylorrhynchus Hbs have disulfide-bonded trimers, Macrobdella, Haemopis, and Riftia Hbs have disulfide-bonded dimers and Eudistylia Chl has disulfide-bonded tetramers, in agreement with the results of early electrophoretic studies (608, 616). The polypeptide chain and subunit masses when used to calculate the masses based on the bracelet model of 12 dodecamers (144 globin chains) and 36 or 42 linker chains provide generally good agreement with the experimental masses of the native Hbs. Furthermore, simple glycosylation [(GlcNAc)2(Man)n, n = 6-9] was observed only in Lumbricus (~2.1 wt%) (370) and Haemopis Hbs (210). Although the annelid Hbs that have been examined do not appear to have free Cys residues, Eudistylia Chl has a cysteinylated Cys in one of its six globin chains (211).
Studies on Perinereis aibuhitensis Hb indicate a high affinity of linker chains for the globin subassemblies, a low affinity for the abc trimers, and no affinity for the monomeric subunits (206). The linker chains were inferred to hold the subassemblies together in the two-tiered structure by connecting the carbohydrate side-chain groups of the globin chains ("carbohydrate gluing") (677, 678). In view of the relatively rare occurrence of glycosylation in annelid Hbs, such a role for the linker subunits appears to be unlikely.
C) O2 binding properties and allosteric
transitions. I) O2 affinities.
Extracellular annelid Hbs occur at high in vivo concentrations and
provide large blood O2-carrying capacities, up to 200 ml/l blood (as in humans) in the giant earthworm Glossoscolex
giganteus and ~135 ml/l in Arenicola marina
(272, 575, 576), compared with the low solubility of O2 (5-7 ml/l) in
air-equilibrated body fluids. They generally exhibit moderately
high O2 affinities (P50 = 2-10 Torr
at 20°C) (94, 351, 582,
629) (Fig. 3; Table 2, extracellular Hbs) that
appear to be adaptations to low ambient O2 tensions in
aquatic species, and low internal O2 tensions associated with the general lack of specialized respiratory surfaces (lungs) in
terrestrial ones. In contrast to the tissue and RBC Hbs that show
either low sensitivities to effectors or none, the extracellular Hbs
exhibit highly variable expression of allosteric interactions in
different species and in the same species under different
physicochemical conditions (see Fig. 5)
(94, 582, 629). The span of the
functional properties is illustrated by the high O2
affinity and cooperativity and large Bohr effect in Arenicola
marina Hb (P50 = ~2 Torr at 20°C,
n50 = 5,
=
0.77)
(576) (Fig. 3) and the low corresponding values in the
terrebellid Eupolymnia crescentis (P50 = 36 Torr at 10°C, n50 = 1,
= 0)
(365) (Fig. 3) and the nephthiid Nephthys hombergi (P50 = 13 Torr at 25°C;
n50 = 1.1,
=
0.1)
(626) (Weber, unpublished data) (Fig. 5). It should be
pointed out that the molecular properties of noncooperative HBL Hbs
have not been investigated. The few results available on the structure
of Nephtys Hb suggest that the low cooperativity or lack
thereof could be due to extensive intersubunit globin-globin as
well as globin-linker disulfide bonding (381,
617). This possibility is supported by the inability of
the maximum entropy deconvolution algorithm to resolve the ESI-MS
spectrum of Nephtys Hb under conditions similar to those used for the highly cooperative HBL Hbs (B. Green, personal
communication.)
|
The Hbs of alvinellid polychaetes from deep-sea, hydrothermal vents
are characterized by very high O2 affinities (P50
= 0.3-0.4 Torr at pH 7.25 and 20°C) (581) (Fig.
5). In the absence of data on in situ O2 tensions and pH,
it is not known whether these are adaptations to hypoxia. Moreover,
given the high heats of Hb oxygenation (
H =
59 kJ/mol), the in vivo blood O2-binding affinities in animals from the hot (50°C) water surrounding the hydrothermal vent
chimneys may be considerably lower (544). The in vivo
affinities are decreased further by low blood pH values and large Bohr
factors (
=
0.9 and
1.2 in Alvinella pompejana
and A. caudata, respectively, at 30°C)
(579, 581). The HBL Hb from the cold-seep
orbiniid polychaete Metanoaricia dendrobranchiata similarly
has a high O2 affinity and marked pH and temperature
effects (P50 = 0.6 Torr,
=
0.44 at 20°C,
H =
58 kJ/mol) (S. Hourdez, R. E. Weber, and
C. R. Fisher, unpublished data).
Although the O2 binding cooperativities of Chls
(n50 ~3.3) are similar to those found in
HBL Hbs, Chls have much lower O2 affinities (P50 ~150 Torr at neutral pH) (Fig. 3), which decrease
drastically at low pH due to pronounced Bohr effects, indicating that
the upper part of their O2 binding curves is not exploited
in life (14, 94, 187,
259, 260, 383, 549,
649). The presence of a distal Phe observed in the
sequence of a Eudistylia Chl globin chain (L. Moens,
personal communication) correlates with the low O2 affinity
of the native complex since a distal Phe substitution in HbA leads to
decrease in affinity (297). Studies of
Eudistylia Chl structure using chemical dissociation and
ESI-MS (211, 441) have shown it to
consist of disulfide-bonded dimers and tetramers of several globin
chains, which form noncovalent tetramers and dodecamer subassemblies,
respectively. The isolated subassembly has a higher affinity and a
lower cooperativity than the native Chl (P50 ~60 Torr and
n50 ~2.1) (259). According to the
Monod, Changeux, and Wyman (394a) model, the low
O2 affinity is attributable to low values of both
KT and KR; it is an
intrinsic property of the protein and does not originate from a bias in
the allosteric equilibrium toward the T state (259).
Unlike Lumbricus Hb, Eudistylia Chl does not show
any effect of assembly size (down to tetramers) on the ligand binding
kinetics (188, 189). Curiously,
chlorocruorohemes and protohemes coexist in the HBL heme protein
present in the vascular fluid of the polychaete Serpula
vermicularis (549). It is not known whether the two
hemes share a common HBL structure or each heme is associated with
different HBL structures. This mix results in a relatively high,
pH-independent Hb-O2 affinity (P50 = ~8 Torr at 20°C) and a low, pH-dependent Chl-O2
affinity (P50 ~40 Torr at pH 7.1,
=
0.8)
(549).
A major factor modulating the temperature dependence of O2
affinity is O2-linked proton binding (see sect.
IIB5), which varies greatly in HBL Hbs. The
lower overall heat of oxygenation (
H) of the intertidal
Arenicola marina Hb relative to that of the subtidal
Abarenicola clarapedii Hb correlates with a larger Bohr effect in the former (627). Analogously,
H
of Perinereis Hb falls from
47 kJ/mol at pH 6.6, where the
Bohr effect is small, to
20 to
27 kJ/mol at pH 7.4-8.2, where the
Bohr effect is maximum (589). The reduction in
H in Potamilla Chl in the presence of Mg2+ (from
16.3 to
2.9 kJ/mol) (260)
indicates that cation binding to HBL is endothermic and safeguards
O2 loading at high temperatures. A similar effect of
Ca2+ is observed in Arenicola marina Hb at pH
<7 (R. E. Weber, R. Birkedal, and A. Fredsted, unpublished data).
Potamilla Chl exhibits an interesting effect related to the
heats of oxygenation for binding successive O2 molecules.
In contrast to Hbs from the Octolasium complanatum
(473), Macrobdella decora (641),
and Arenicola marina (Weber, unpublished results), where the
upper and lower asymptotes of the Hill plots show similar temperature-induced shifts, the
H1 and
H99 values (the oxygenation heats for the
first and last O2 molecules bound) differ drastically in
the Chl (+6.3 and
69 kJ/mol) (260), implying the
domination of endothermic processes in the initial stages of the
oxygenation process. This is reminiscent of CO binding to trout HbI
that shows a reverse temperature effect at low saturation due to
endothermic conformational changes conditioned to the subunits in the T
state (674).
II) Allosteric transitions. A resonance Raman spectroscopic study of Lumbricus Hb showed that in contrast to vertebrate Hbs, ligand binding did not result in spectral alterations involving the iron-proximal His stretching mode (607). This behavior, analogous to that of Mb, suggests that the mechanism(s) of cooperativity in HBL Hbs is likely to be very different from the mechanisms of cooperativity in vertebrate Hbs (427, 429) and in the homodimeric Hb from the clam Scapharca (466, 467) (see sect. IIIB6C). Furthermore, small-angle X-ray scattering studies of the oxy and deoxy forms of the Hb and the isolated dodecamer subassembly showed no observable alterations in their molecular shapes in going from one form to the other and back (326, 328). This result suggests that ligand binding does not produce an alteration in quaternary structure larger than an ~1% (~2-3 Å in height or diameter, respectively) change in molecular shape, the latter being the limit of the technique.
In contrast to mammalian Hb where Hill coefficients are typically constant at levels of O2 saturation between 10 and 90% over a wide range of pH values (12), those of the HBL Hbs vary greatly from species to species (94, 186, 578, 630) and intraspecifically with O2 saturation, pH, inorganic cation concentration, and temperature (248, 333, 405, 581, 630) (Fig. 5). Cooperativity is commonly maximal under physiological pH conditions, as in Arenicola marina where it peaks at pH 7.2-7.6 (at 20°C) and in the hydrothermal vent alvinellids Alvinella caudata and A. pompei, where peak values near pH 6.9 appear to correlate with low blood pH (581, 582). However, mismatching between in vivo pH and pH of maximum cooperativity is seen in Lumbricus terrestris where blood cooperativity increases from ~3 at low pH to a maximum of 9.5 near pH 7.8 (326). Likewise, the cooperativities of the Hbs from the oligochaetes Pheretima hilgendorfi (404) and Eisenia foetida (248) and leeches Hirudo medicinalis (255) and Macrobdella decora (256, 641) are maximal at pH above 8.0. Marked temperature dependence is illustrated by the thermotolerant Alvinella pompejana Hb, whose nmax at pH 7.25 falls from 3 at 20°C to 1.2-1.5 at 10 and 40°C (581) (Fig. 5). This indicates pronounced differences in the overall heats of oxygenation of the deoxygenated and oxygenated forms of the Hb.
The cooperativity of Hb in fresh blood appears to be higher than that of purified Hb, e.g., in Octolasium complanatum (473) and Lumbricus terrestris (326). This may result from loss of cations during purification, which increases O2 affinity at high saturation (see below) and stabilizes the HBL structure. It should be pointed out that ESI-MS revealed no additional component in Lumbricus blood compared with the Hb in solution (B. Green and S. Vinogradov, unpublished results).
Among annelids, large Bohr effects that permit O2 unloading in tissues at high tension but hinder O2 loading in stagnant and acidic environments commonly characterize species with intense ventilatory or swimming activity (e.g., Arenicola marina), whereas small effects commonly occur in species that lack well-defined burrows [e.g., the oligochaete Alma emini (38) and polychaetes Travisia pupa (366) and Nepthys hombergii (626)]. This is in accordance with the principle that pH-induced O2 unloading at the destination tissue is an adaptive option only if O2 loading at the respiratory surface is adequate. Lower pH values in prebranchial than in postbranchial blood, a prerequisite for a functional Bohr effect, has been demonstrated in Arenicola cristata (352). Conceivably, large Bohr effects may compensate for small pre- and postbranchial pH differences. Apart from lactic acid and CO2, annelids produce succinic, propionic, and acetic acids under conditions of O2 shortage, resulting in decreased tissue pH (437, 477).
Among the Hb-containing intertidal eunicid polychaetes, Marphysa sanguinea inhabits stagnant burrows, whereas Diopatra cuprea inhabits impermeable, vigorously ventilated tubes. The higher O2 affinity and smaller Bohr effect in Marphysa Hb relative to Diopatra Hb correlate well with lower O2 dissociation and higher CO association rates and a lower pH dependence of these reactions (636). A study of the kinetics of ligand binding by the Hb from the polychaete Cirraformia grandis (659) showed that the origin of the strong Bohr effect was entirely due to the strong pH dependence of O2 dissociation rates, which decrease 800-fold in going from pH 9 to 6 while the rates for O2 and CO association remain invariant.
In Arenicola Hb, increases in the Bohr effect and in cooperativity with increased O2 saturation (in accordance with the pH dependence of KR, see below) enhance O2 loading in the gills (631) and increase O2 extraction (which may exceed 85%) from the ventilatory water flow (582). Exploitation of the upper part of the equilibrium curve under normoxic conditions enhances the O2 diffusion gradient to tissue Mb and mitochondria and ensures a high "venous" O2 reserve (578, 582). Correlations seen between the magnitude of cooperativity and that of the Bohr effect in individual Hbs and within the same Hb under specific physicochemical conditions (e.g., pH, O2 saturation) suggest similarity of the underlying hetero- and homotropic transitions or implication of the same allosteric transitions.
D) CATIONIC EFFECTORS. Blood electrolyte levels in annelids vary greatly due to the varying ambient salinity and the absence of well-defined osmoregulatory capacities in the aquatic species and the potential for dehydration in the terrestrial forms. In osmoconforming Arenicola marina, blood O2 affinity increases with water salinity (333) resulting from the facilitating effect of divalent inorganic cations on O2 binding (151, 631). Similar effects are seen in other HBL Hbs and Chls.
Effector modulation of annelid Hbs differs radically from that in
vertebrate Hbs. In the latter, organic anions (like DPG and ATP)
decrease the O2 affinity by preferentially decreasing the
O2 association equilibrium constants in the deoxygenated T state (right shifting the lower asymptote of extended Hill plots). In contrast, inorganic cations (Na+, K+,
Ca2+, Mg2+) increase the affinity of
Arenicola Hb by preferentially increasing the binding
constants in the oxygenated (putative) R state (left shifting the upper
asymptote); the divalent cations exert a greater effect than monovalent
cations (631) (Fig. 6).
Analogously, in the physiological pH range, the Bohr effect of
Arenicola marina Hb is primarily due to increases in
KR with rising pH, whereas the Bohr effect in
vertebrate Hbs generally results from increases in
KT with KR remaining
relatively constant (631). In the annelid Hbs, the changes
in KR result in increases in cooperativity and the Gibbs free energy for heme-heme interaction (
G)
with increased pH and cation concentration.
|
The changes in KR indicate that the oxygenation-linked binding of protons and divalent cations to HBL Hbs occurs late in the oxygenation process (173, 631), thus coinciding with high in vivo O2 saturations, as observed in Arenicola. Modulation of KR by divalent cations and pH has been documented in a number of species, including the Hbs of oligochaetes, Megascolecides australis (634), Octolasium complanatum (473), Lumbricus terrestris (173), Eisenia foetida (248, 405), the polychaete Perinereis aibuhitensis (589), the leech Macrobdella decora (641), and the Chl of Potamilla leptochaeta (260). Modulation of KR implies the existence of at least two high-affinity, "relaxed" states. For Lumbricus Hb, the pH and cation dependence of KR indicates at least one state at low pH that is independent of the presence of salt and others occurring at high pH and/or high salt concentrations (173).
Curiously, a different control mechanism appears to operate in the Hb of the deep-sea polychaete Alvinella pompejana, where 0.1 M Ca2+ at pH 7 increases affinity by raising KT without significantly affecting KR (R. E. Weber and F. Zal, unpublished results). Affinity modulation via KT in this species is also reflected in the large Bohr effect in the (almost completely) deoxygenated Hb and an insignificant effect in the (almost fully) oxygenated Hb (581).
Although the effects of divalent group IIA cations on O2 affinity of HBL Hbs exceeds that of monovalent ions, the cation sensitivities in Lumbricus Hb (Ba2+ > Ca2+ > Sr2+ > Mg2+ > Li+ > Na+ > K+) not only depends on ionic strength but reveal effects of ionic radius within each valence class (173). This accords with greater effects of Ca2+ than Mg2+ in Amphitrite ornata (84), Eisenia foetida (248, 405), Pheretima hilgendorfi (404), and Hirudo medicinalis (255) Hbs as well as a greater effect of Ba2+ than other divalent cations in Macrobdella decora Hbs (256). However, O2 binding to Tubifex (408) and Marphysa sanquinea Hbs (R. E. Weber and J. Bonaventura, unpublished results) appears to be insensitive to Ca2+ and Mg2+ concentrations, as is observed with Eurythoe complanata Hb and Mg2+ (250). Also, Ca2+ and Mg2+ exert the same effects on the affinity of Glossoscolex paulistus (368) and Arenicola marina Hbs (151) (T. Ochiai and R. E. Weber, unpublished results). Furthermore, the pH decreases observed upon cation addition to Arenicola Hb solutions are in accord with their ionic contributions calculated from changes in the local Debye-Hückel distributions of ions at the negatively charged surface, indicating the dominance of ionic charge (643).
Little is known about effects of other metal cations. Hbs from the oligochaetes Lumbricus terrestris, Tubifex tubifex, and Tylorrhynchus contain 1-4 Zn and Cu atoms (509). In Pheretima hilgendorfi, where the blood contains 0.9 mM Zn2+, and 1-2 Zn atoms per 164 Fe atoms that cannot be removed by dialysis, addition of Zn2+ increases affinity and almost obliterates cooperativity by raising KT (407), suggesting a different mechanism and/or different binding sites compared with Ca2+ and Mg2+. Cooperativity of Glossocolex Hb is higher in the presence of Mn2+ than with Ca2+ and Mg2+, despite similar O2 affinities induced by these cations (368). Curiously, specific rabbit antisera to Glossoscolex paulistus Hb increased its O2 affinity, whereas nonspecific serum and serum albumin decrease its affinity (74).
The cation effects on HBL Hbs may have ecophysiological implications. In Arenicola marina, where blood Ca2+ and Mg2+ levels are 8 and 60 mM, respectively (333), the cation sensitivity of KR conceivably increases Hb oxygenation at low tide when burrow ventilation ceases and hypoxic conditions coincide with the residence of dense, saline, high-tide water in the burrows (631).
E) COMMON ORIGIN OF PH AND CATION EFFECTS. Considerable evidence suggests a common origin for the observed pH and cation effects on the affinity and cooperativity of O2 binding, based probably on competition for the same sites within the HBL Hbs. Cation addition to solutions of Arenicola marina Hb decrease pH in the bulk solution, indicating displacement of protons and that cations and protons bind to the same sites (643). Two and one protons appear to be released per oxygenated heme for each bound Ca2+ and Na+, respectively, in Lumbricus terrestris and Eisenia foetida Hbs (173, 248). The highly polar pre-A helix NH2-terminal extensions of chains a and c in L. terrestris trimer may provide the cation binding site (174). In the oligochaete Octolasium complanatum, the Bohr effect appears to be wholly attributable to O2-linked binding of allosteric effectors, and the O2 affinity varies within a well-defined range, set by the "cation-free" (low affinity, low cooperativity) and "cation-saturated" (high affinity, high cooperativity) states of the Hb (473).
Further evidence comes from similar dose-response relationships. Apart from their major effects on KR at moderate concentrations and pH values (that span physiological conditions), high cation or pH values also raise KT in the Hbs of Arenicola marina (631), Lumbricus terrestris (173), Eisenia foetida (248), and Macrobdella (641) as well as in Potamilla leptochaeta Chl (260).
There is substantial evidence that the integrity of the HBL structure depends on a minimal concentration of group IIA divalent cations (52, 84, 405, 434, 473). Most reported instances of quaternary structure stabilization have been semiquantitative observations of reduction in the extent of dissociation of the HBL structure at pH >8 in the presence of 1-100 mM cation. The following typical effects were observed with Lumbricus Hb: 10-20 mM Mg2+, Ca2+, and Sr2+ were equally effective in decreasing dissociation from 70 to 10% at pH 9 (434). Likewise, almost complete dissociation in 4 M urea at neutral pH in the presence of 1 mM EDTA after 144 h decreased to ~50% dissociation in the presence of 10 mM Ca2+ (484). Furthermore, the extent of reassembly of Lumbricus Hb from isolated dodecamer subassembly and isolated linker(s) is absolutely dependent on the presence of Ca2+, albeit at levels of ~1 mM (335). Illustrative examples of cation effects on the affinity and cooperativity of O2 binding are seen in oligochaete Eisenia Hb, where P50 and n50 values at pH 8.0 are 3.3 Torr and 4.2, respectively, in native Hb, 2.6 Torr and 6.3 in 1 mM Ca2+, 1.8 Torr and 8 in 10 mM Ca2+; 3.2 Torr and 5 in 1 mM Mg2+, and 2.7 Torr and 6.6 in 10 mM Mg2+ (405), and in polychaete Perinereis Hb (589), where P50 and n50 values of 15.5 Torr and 2.7, respectively, observed in the native Hb at pH 7.4 and 25 °C, changed to 12.1 Torr and 4.1 in 25 mM Mg2+ and to 10.9 Torr and 4.9 in 100 mM Mg2+.
It is evident that the presence of 36-42 linker chains, each with a CRD domain known to have high affinity for Ca2+ (see sect. IIIC3B), provides Lumbricus Hb and by implication most HBL Hbs with a range of Ca2+-binding sites. There is some evidence for some Ca2+ binding in the dodecamer subassemblies as well (334a). More importantly, ESI-MS of isolated linker L3 in the presence of Ca2+ showed it to be able to bind up to 6-8 Ca2+ (334a). It appears likely that structural stabilization is effective at low, ~1-10 mM, cation concentrations, while the effects on O2-binding affinity and cooperativity occur at higher cation levels, from ~10 to 100 mM.
F) O2 binding properties of globin subassemblies and subunits. An intriguing issue is the effect of assembly size on functional properties, or to put it another way, to what extent the functional properties manifested in the HBL structures are expressed in the constituent subassemblies and subunits. The quest for the "minimum functional subunit" is complicated by the fact that it depends on the functional criterion (O2 affinity, cooperativity, Bohr effect, cation or temperature effects, etc.), specific physicochemical conditions (pH, effector concentration, temperature, etc.), the species, and the point of reference (whole blood or purified Hb).
The high n50 values encountered in HBL Hbs (9.5 in Lumbricus terrestris at pH 7.8; Fig. 5)
(326) suggest cooperative interaction between at least 10 hemes according to the MWC model. Early studies on alkaline
dissociation products of HBL Hbs indicate similar O2
affinities and cooperativities in the ~10S subassemblies as in the
intact ~60S molecules for Arenicola marina
(625) and lumbricids (122, 186)
Hbs, but lower cooperativity for the subassemblies from
Abareni-cola affinis (92, 93) and
from Eisenia fetida (166a) Hbs. The dodecamer
subassemblies of Lumbricus terrestris, prepared by mild
dissociation (at neutral pH in 4 M urea), show similar P50
values (11.5-11.9 Torr at 25°C and pH 7.5) and the same Bohr
effect and Mg2+ and Ca2+ sensitivities as the
intact Hbs, but lower cooperativity (n50 ~2-3
compared with ~5 in Hb and ~9.5 in whole blood, at pH 7.8) (326, 613). Further evidence comes from the
cold-seep orbiniid Methanoaricia (see sect.
IIIC3A), where 210-kDa Hbs, which
resemble HBL subassemblies in size, exhibit lower homotropic and
heterotropic interactions than HBL Hbs (n = 2.0 and
1.2, respectively;
=
0.44 and
0.13, respectively, at
20°C) although their O2 affinities are the same at pH 7.4 (S. Hourdez, R. E. Weber, and C. R. Fisher, unpublished data).
Investigation of the functional properties of the trimer and monomer subunits of Lumbricus Hb (175) found P50 = 3 Torr and n50 = 1.4 for the abc trimer and 1.6 Torr and unity, respectively, for the d monomer. In contrast to the monomer subunit, the O2 affinity of the trimer is modulated by pH and Ca2+, and a putative [abc-d]2 complex exhibited the same P50 and n50 as the whole molecules at pH 6.8 in the presence of Ca2+. An effect of assembly size was also observed in ligand binding kinetics of Lumbricus Hb and its subunits (189).
Another case is the Hb of the leech Macrobdella decora,
where the intact HBL molecules, and the tetramer and monomer subunits show neatly increasing affinities (P50 = 4.4, 1.9, and
0.3 Torr, respectively, at pH 7.5 and 25°C) and decreasing Bohr
factors (
0.38,
0.30, and 0, respectively) and cooperativities
(n = 3.1, 1.4, and 1.0, respectively)
(641) (see Fig. 7). For
Eudistylia vancouveri Chl, the CO binding kinetics of
dodecameric and tetrameric fragments are like that of the holoprotein,
suggesting that the tetramer is the major cooperative unit
(188). However, some extended interactions occur, as
evidenced by the fact that the dodecamer subassembly exhibits lower
cooperativity and Bohr coefficient than the native Chl
(259).
|
Analysis of precise O2 binding data in terms of the MWC model provides an alternative approach to delineating functional subunits. Graphical analyses indicate six interacting sites in Perineries aibuhitensis Hb (589) and Potamilla leptochaeta Chl (260) and between 5 and 12 in Lumbricus terrestris (173). By fitting the number of interacting O2 binding sites together with the other MWC parameters to O2 equilibrium data, Weber et al. (641) find the number that gives the best possible fit to be ~10 for Macrobdella decora Hb. This value is close to the number of hemes per dodecamer and to the highest values of n observed in HBL Hbs but much greater than the number of hemes in the smaller dissociation products. Lumbricus subassemblies exhibit equally large free energies of heme-heme interaction as the whole molecules at pH 7.7 (326) (Weber and Vinogradov, unpublished results). Together, these considerations confirm the early conclusion (122, 186, 613, 625) that dodecamer subassemblies are the principal functional subunits of HBL Hbs, although full cooperativity appears to be dependent on the presence of the complete HBL structure (613).
Additional evidence derives from the KT
and KR values of dissociation products. Given
that finite bond energies constrain the molecules in the T (tense)
states, the difference in the KT values (that
can be determined experimentally with greater accuracy than
KR values) indicates the bond energy difference
associated with dissociation to subunits (641). The
difference in T-state bond energies between the dodecamer
subassembly and the native HBL structure of Lumbricus Hb
[calculated as
GT = RT
ln(KT,D/KT,HBL), where
R is the gas constant and T the absolute
temperature] is small (~1 kJ/mol heme) (326),
suggesting that assembly of the dodecamer subassemblies into the HBL
structure imparts very little constraint on the dodecamers in the
deoxygenated form. In Macrobdella decora Hb, the higher
O2 affinity of the tetramer subunit than that of the native
HBL similarly correlates with increased KT (Fig.
7). The KT values for the HBLs and tetramers,
0.28 versus 0.037 Torr
1, respectively (at pH 7.26 and
25°C), reflect a bond energy difference of ~5 kJ/mol heme,
corresponding to the loss of approximately one salt bridge per heme
group upon dissociation into tetramers (641). It should be
noted that at least in the case of Lumbricus and
Macrobdella Hbs, the Hill plots are not symmetrical
(326, 613, 641). Consequently,
n50 is generally found to be lower than
nmax. In view of the complex quaternary
structure of HBL Hbs, analyses in terms of "nested" MWC models are desirable.
G) VESTIMENTIFERAN HBS. This section deals with the structure and O2 binding properties of vestimentiferan Hbs; the reactions of these and other Hbs with sulfide are discussed in section VB1.
Vestimentiferans, like the hydrothermal vent worm Riftia pachyptila, lack an alimentary canal and derive energy from symbiotic, chemolithoautothrophic, endosymbiotic, sulfide-oxidizing bacteria that occur in cells of a specialized organ, the trophosome. Riftia blood has high O2-carrying capacity (2.3-4.6 mM heme), may carry 1.3 times as much sulfide, and stores and transports O2 and sulfide to the symbionts that in turn satisfy the worm's nutritional needs (25, 26, 87, 196).
Riftia possesses three extracellular Hbs: a vascular, ~3,500 kDa Hb V1, a vascular, ~400 kDa Hb V2, and a coelomic, ~400 kDa Hb C1. Hb V1 is an HBL Hb that consists of six different globin chains, some of which form disulfide-bonded dimers and several nonglobin linker chains. The ESI-MS of the Hb (688) looks very similar to the ESI-MS of the leech Hbs, Macrobdella (641) and Haemopis (210). Its three-dimensional reconstruction obtained by cryoelectron microscopy (130) shows a quaternary structure very similar to the of Lumbricus and other HBL Hbs. Hbs V2 and C1 consist only of globin chains (688), which they share with the HBL Hb V1.
The deep-sea, vestimentiferan tube worm Lamellibrachia has a ~3,000-kDa, extracellular HBL Hb that has four heme-bearing chains (AI-AIV) and two linkers (AV and AVI) and a ~440-kDa Hb that has four chains (BI-BIV) (528-530). The amino acid sequences of the eight heme-bearing chains (AI-AIV and BI-BIV) show high homology with those of annelid HBL Hbs. However, the Lamellibrachia chains possess an extra cysteine residue (Cys-74) that is considered to be a potential sulfide-binding site (529). The O2 and sulfide binding properties of Lamellibrachia Hbs have not been studied.
Whole Riftia blood binds O2 cooperatively
(n50 = 2.8) with a moderately high affinity
(P50 = 2.7 Torr at 14°C, pH ~7.4) and low pH
sensitivity (
=
0.12) (25). A 1,700-kDa vascular
Hb fraction, which could represent partially dissociated Hb V1 and the
400-kDa vascular Hb V2, showed lower cooperativities (n = 1.9 and 1.3, respectively) and marked differences in
O2 affinities (P50 = 1.3 and 0.9 Torr at
40°C) and pH sensitivities (
=
0.35 and
0.04,
respectively) but similar high overall heats of oxygenation (~
69 kJ/mol) (28) (Table 2, extracellular
Hbs). The O2 association rate of Riftia Hb
shows temperature independence, in contrast to pronounced temperature
dependence of the O2 dissociation rate, which indicates
compensation by a large decrease in the value of the conformational
equilibrium constant, a behavior similar to that of the
electrophoretically cathodic HbI of trout (674).
H) WHY HBL STRUCTURES? What could be the selective pressure for developing complex macromolecular structures like the HBL Hbs in invertebrates?
The higher cooperativies measured in native molecules than in subassemblies and smaller subunits indicate that the association of subunits into HBL structures may increase the oxygen transport capacitance (O2 turnover for a given O2 tension difference at the sites for loading and unloading O2).
The large HBL macromolecular structure may also protect the Hb from loss through membranes (629). Evidence supporting this view is that freely dissolved annelid HBL molecules occur in closed blood vascular systems, whereas low-molecular-weight coelomic Hbs occur in RBCs. "Exceptions that confirm the rule" are Nephtys, where a HBL Hb occurs freely dissolved in the coelomic fluid, and chironomid larvae, where monomeric and dimeric Hbs are in solution in the hemolymph. Excretion occurs without filtration in the two organisms, which use protonephridia and malpighian tubes, respectively (626, 629).
The view that HBL morphology may be adaptive in potentiating the O2 transport ratio (the O2 carrying capacity divided by viscosity in solution, which happens to attain maximal values at the Hb levels observed in the worms) is supported by the observation that the intrinsic viscosity of Arenicola marina Hb is <25% of the value predicted for a linear polymer of comparable molecular weight (505). Another argument is that aggregation permits a high concentration of O2 binding sites without inordinately increasing osmotic pressure (122); this is doubtful given that even complete dissociation of the protein (into monomers) would make only minute colligative contributions compared with those of the electrolytes in the blood of annelids (629).
Apart from functional considerations, it is also desirable to consider the structural basis of HBL formation. A recent study of Lumbricus Hb reassembly from isolated dodecamer subassembly and various combinations of the four types of linker chains showed that reassembly to an HBL structure indistinguishable from the native one from three-dimensional reconstructions using cryoelectron microscopy was possible with binary and ternary linker combinations as well as with single linkers (335) (J.-C. Taveau and J. Lamy, personal communication). This finding implies that each linker has globin and linker-binding domains. Consequently, a model of HBL reassembly was proposed starting with 12 globin dodecamer subassemblies and 36 linker chains (335) (Fig. 8), based on the idea that the binding of a linker dimer (but not a monomer) causes conformational alterations in the linker-dimer bound two trimer subunits permitting lateral self-association between the dodecamer subassemblies. Given the threefold symmetry of the latter, lateral self-association of dodecamer-linker subassemblies DL2L and DL2L-LL2D dictates the formation of either a single hexagonal complex (DL2L)6 (which can then dimerize) or a complete HBL structure (DL2L-LL2D)6. Although this model provides a rational explanation for why an HBL structure is formed, it does not say anything about the packing of the linker chains. Furthermore, this model suggests that it is the formation of a threefold symmetric dodecamer subassembly that is required for an HBL structure to be formed. Thus the next question is why would a dodecamer subassembly M3T3 be elaborated?
|
4. A new annelid quaternary structure comprised of four-domain globins
A diverse panoply of Hbs was found recently by Hourdez and co-workers (243, 244) in the coelomic fluid of the polynoid polychaete Branchipolynoe (scaleworm) existing within the palleal cavity of the mussel species Bathymodiolus, which occurs at the deep-sea hydrothermal vents. In addition to a minor component that has a mass of ~3 MDa and could represent an HBL Hb, two major components of 153 and 124 kDa and a minor one of ~23 kDa were observed (243, 244). ESI-MS of the two major components showed them to be trimers and dimers of 57,996- and 57,648-Da chains, respectively, each chain comprising four globin-binding domains. The littoral species of the family Polynoidae has not been found to contain Hbs except in the case of Aphrodite and Halosydna, which have limited amounts of Hb in nerve tissues (660). The two major Hbs of Branchipolynoe have moderately high O2 affinities (P50 = 1.4 and 2.3 Torr at pH 7 and 20°C) and low cooperativites (n50 ranging from 1.0 to 1.9 over the pH range 6.5-8) (243). Unlike the vestimentiferans, alvinellid polychaetes and vesicomycid clams inhabiting the hydrothermal vent environment, Branchipolynoe does not host a sulfur-oxidizing symbiont. The high affinity and low cooperativity, reminiscent of Mbs, and the presence of gills with a large surface area and small diffusion distances (241) are not inconsistent with a possible O2 storage role for the Hbs, which would enable the worm to sustain an aerobic metabolism in spite of progressive O2 depletion occurring in the host mantle cavity during periods of shell closure (244).
5. Pogonophorans
Relatively little is known about pogonophore Hbs. Siboglinum fiordicum and Oligobrachia mashikoi occur buried in marine sediments and have ~400-kDa Hbs that are probably similar to the V2 and C1 Hbs found in Riftia (562, 683). Both Hbs consist of 14- to 15-kDa globin chains. Surprisingly, a low heme-to-protein ratio similar to HBL Hbs (1 heme/21.5-kDa protein) has been reported for Siboglinum Hb (562), although there is no evidence for nonglobin linker chains. Oligobrachia Hb consists of monomers and disulfide-bonded dimers and trimers (683) like the monomers and trimers encountered in oligochaete and polychaete Hbs and the monomers and disulfide-bonded dimers in leech and Riftia HBL Hbs (339). The Oligobrachia globin sequences exhibit high similarities with those from oligochaete (Lumbricus), polychaete (Tylorrhinchus), and vestimentiferan (Lamellibrachia) Hbs (683). This supports recent genetic and embryological evidence for including vestimenteferans and pogonophorans in the annelid phylum (57, 311, 376, 682).
S. atlanticum Hb occurs at high in vivo concentration
(~0.6 mM), has a low isoelectric point (pI = 4-5) like the HBL
Hbs, and comprises two electrophoretically distinct components
(367). The Hb and blood of S. ekmani
(650) and S. fiordicum and S. atlanticum (562) show high O2 affinities
(0.4-1 Torr at 15-20°C), marked cooperativities (n = 2-3.3), and a small Bohr effect (
= +0.18 in S. fiordicum) that may be related to recurring low ambient O2 tensions and the need to transport O2 to the
buried posterior ends of the body that harbor autotrophic endosymbiotic
bacteria (562).
The ~400-kDa mass of the pogonophore Hbs and the C1 and V2 Hbs of Riftia suggests that they consist of ~24 globin chains. Although they could be dimers of dodecamer subassemblies, it should be noted that the latter require nonglobin linker chains to form HBL structures and when isolated do not self-associate. Furthermore, the lower cooperativities of these Hbs than those of HBL Hbs underscore the putative role of the linker subunits in enhancing the cooperativity of the dodecamer subassembly upon formation of the HBL structure.
6. Molluscs
Molluscs have two classes of large extracellular Hbs: 1) the 1.65- to 2.25-MDa Hbs found in freshwater, pulmonate gastropod snails of the family Planorbidae (e.g., Planorbis, Biomphalaria, Helisoma, Indoplanorbis and Planorbella), and 2) the 8- to 12-MDa Hbs occurring in the heterodont bivalve families Astartidae and Carditidae (including Astarte and Cardita) (53, 543, 558, 608). Features shared by the mollusc extracellular Hbs, as well as their alternate copper-containing oxygen carrier hemocyanin, are large multidomain polypeptide chains, comprised of 10-12 and 18-20 globin domains in pulmonates and bivalves, respectively (543, 558).
A) PLANORBID GASTROPOD HBS. The 1.65- to 2.25-MDa pulmonate Hbs are comprised of large, 175-200 kDa, 10-12 domain chains that form disulfide-bonded dimers of ~350-400 kDa (7, 24, 230, 231, 406, 556) (Fig. 1). The quaternary structure of these Hbs remains unclear, mainly because of the lack of sequence information. Although Daniel and collaborators (254, 433) have proposed a slightly ellipsoidal shell structure with tetrahedral symmetry consisting of 12 subunits, Herskovits and Hamilton (230, 231) have proposed a compact two-layer ring structure of 10 decamer subunits. Biomphalaria Hb is a glycoprotein that contains 3% sugars (3). In addition to the extracellular Hb, a muscle Mb is also found in Biomphalaria (136).
The hemolymph of Biomphalaria glabrata shows a moderately
high O2 binding affinity (P50 = 6 Torr at
25°C, pH 7.7) (64, 597) and exhibits
pH-dependent cooperativity (n50 = 1.2-2.0). It shows similar "fixed acid" and "CO2"
Bohr effects (
=
0.2 to
0.5; Fig. 5), indicating the
absence of a specific CO2 effect and exhibits novel
allosteric control mechanisms (64). As in the annelid HBL
Hbs, cations increase O2 affinity (with the following
relative effects: Ca2+ > Mg2+ > Na+
K+), and the Bohr effect is
predominantly attributable to pH-induced increase in
KR. However, in contrast to annelid Hbs where
cations raise KR, Ca2+ increases
KT in Biomphalaria Hb. Thus
G rises with increasing pH and falls with increasing
cation concentrations (64). This indicates that cations
bind to Biomphalaria mainly in the initial stages of the
oxygenation process and protons dissociate predominantly at high
O2 saturation levels, whereas both processes occur late in
the oxygenation process in annelid HBL Hbs. Dose-response curves for the cation effects indicate binding of 0.17 Ca2+ per
oxygenated heme in Biomphalaria (64). The
absence of significant pH changes following Ca2+ addition
underscores a different cation binding mechanism compared with
Arenicola HBL Hb (643) (see sect.
IIIC3). Analysis in terms of the MWC model
indicates 6-9 interacting hemes in the functional subunit of
Biomphalaria blood/Hb at pH 7.2-7.8. Nonlinear van't Hoff
plots of Hb reflect a decrease in temperature sensitivity of
O2 binding with increasing temperature that suggests
changes in the heat capacity of the system resulting from the
dissociation of salt bridges and hydrogen bonds that attends the T
R
conformational alteration (155).
Helisoma trivolvis Hb has a low cooperativity and a marked
Bohr effect (n50 = 1.5 and
=
0.37,
respectively, at pH >7.5) but appears to lack cation sensitivity; its
O2 affinity is unaffected by Mg2+,
Na+, and K+ and is only slightly increased by
0.25 M Ca2+ (545, 561).
Polypeptide chain fragments corresponding to one, two, and more domains
obtained by partial proteolysis lacked cooperativity and Bohr
effects, indicating that the 10-domain (175 kDa) chains are required
for full expression of homo- and heterotropic interactions in
multidomian pulmonate Hbs (556, 561).
B) GIANT HBS OF HETEROTODONT BIVALVES. The 8- to
12-MDa Hbs found in the two families Astartidae and Carditidae hold the
record among invertebrate Hbs in terms of size (563,
676). These physically heterogeneous Hbs appear to be
comprised of 240- to 390-kDa polypeptide chains containing 14-24
globin domains. Negatively stained electron microscopic images show
cylindrical structures varying in length from 36 to 120 nm
(541, 558). Cardita borealis Hb
has a high O2 affinity (P50 = 4.5 Torr at
20°C) and lacks homo- and heterotropic interactions
(563). The lack of cooperativity and similar
O2 affinities obtained for the intact molecules and the
monomeric domain fraction isolated after subtilisin digestion indicate
that the monomers are fully functional entities whose properties are not altered by their integration into the giant native structures (563). Recent findings (R. E. Weber and D. Abele- Oeschger, unpublished results) show a distinct Bohr effect
in C. borealis Hb (
=
0.4 near pH 7.5) and that
Ca2+ raise the O2 binding affinity (as with
extracellular annelid and gastropod Hbs), whereas Mg2+ has
no significant effect. Astarte castanea Hb shows a slight cooperativity and moderate Bohr effect (n50 = 1.2,
=
0.39). In the absence of Ca2+ at
pH 9, it dissociates into single (~335 kDa) protomers, each consisting of a linear sequence of ~20 globin domains
(676).
7. Crustaceans
Polymeric extracellular Hbs occur in the hemolymph of five crustacean classes: 1) the predominantly freshwater Branchiopoda, that include anostracans (Artemia, Parartemia, and Streptocephalus), conchostracans (Cyzicus, Caenostheriella and Caenestheria), cladocerans (Daphnia and Moina), and notostracans (Triops and Lepidurus); 2) Ostracoda; 3) Copepoda; 4) Cirripedia; and 5) Malacostraca (115, 163, 541). A recent study has documented the occurrence of Hb mRNA in fat cells and in epithelial cells of the epipodites of Daphnia, providing the only known evidence regarding the sites of Hb synthesis in crustaceans (200).
A) BRANCHIOPODS. Branchiopod Hbs assume highly diverse quaternary structures and include 220- to 300-kDa proteins occurring in anostracans and conchostracans, and larger and more variable (420-670 kDa and 600-800 kDa, respectively) ones in cladocerans and notostracans (cf. Refs. 253, 541).
I) Two-domain Hbs. Despite molecular masses ranging from 220 to 800 kDa (251), the extracellular Hbs of Cyzicus (Conchostraca), Daphnia and Moina (Cladocera), and Lepidurus (Notostraca) are all comprised of ~35 kDa, two-domain globin chains (251). The two domains of the water flea Daphnia Hb, D1 (176 residues) and D2 (154 residues), have been sequenced (573), and a hexadecameric bilayered eclipsed quaternary structure has been proposed (257). When Daphnia Hb sequences are compared with other two-domain Hbs, such as the clam Barbatia (397), the percent of identity of D1 to D1 and D2 to D2 is 80-90%, whereas comparison of any D1 to any D2 provides only some 20% amino acid identity. Thus it is likely that the two-domain Hbs originated in an ancient tandem duplication via unequal crossing over of two single-domain globin genes; the ancestral two-domain globin gene then evolved with much later occurring serial gene duplications (T. Gorr and F. H. Bunn, personal communication). Daphnia is currently the focus of investigations aimed at the structure and evolution of its globin genes (135b, 227a, 299a) as well as of its physiological adaptations (424a, 433b, 433c).
II) Anostracan nine-domain Hb. In contrast to two-domain Hbs from other branchiopod groups, the 260-kDa Hb of the anostracan Artemia is a complex of two 130-kDa covalent polymers of nine globin domains (363, 392). Each polymer is encoded by a gene representing nine successive globin domains that have different sequences and are presumed to be the result of repeated duplication of an ancestral single-domain gene, possibly involving chains of three domains at some stage (269, 373). Two different polymers T and C exist as the result of a complete duplication of the nine-domain gene, allowing the formation of either homodimers or heterodimers; both have the same number of residues and differ by an average of 12% of the residues; within either polymer, the domains are more divergent, differing at 61-77% (585).
Molecular models proposed on the basis of negatively stained electron microscopic images and dissociation studies visualize the ~494-kDa Hb of the cladoceran Daphnia magna as sixteen 31-kDa chains grouped in two 8-sided layers stacked in eclipsed orientation (a hexadecameric bilayer) (257), and the ~302-kDa structures of the conchostracan Caenestheria inopinata as ten 30-kDa subunits arranged in two pentagonal layers stacked in an eclipsed orientation (253). The Hb of the anostracan Artemia appears in electron micrographs as two stacked disks (393).
III) Induction of Hb during hypoxia. The synthesis of Hb in cladocerans and anostracans is regulated by the ambient O2 concentration (164, 307). The biological advantages of increased Hb concentration under hypoxia are manyfold. In the case of the water flea Daphnia, these include greater viability in hypoxic water, higher swimming activity, increased egg production (164), increased feeding rates, and exploitation of food resources (481). Furthermore, it demonstrably governs the dependence on aerobic metabolism (596) and even affects thermal preference. As recently documented (659a), Hb-rich specimens of D. carinata show a lower metabolic rate than control animals under normoxic conditions, and a higher preferred temperature than control animals under hypoxic conditions.
An intriguing question is whether these advantages are imparted solely
by increased O2 concentration (carrying capacity) or whether alteration in the in vivo oxygenation properties are implicated as well. The latter possibility is indicated by the higher ambient O2 tensions required to half-saturate Hb in vivo in
Hb-poor than in Hb-rich specimens of D. magna
(310), the positive correlation between O2
affinity and Hb concentration (307), and the higher overall heats of oxygenation in Hb from dark red specimens compared with pale ones (
H =
29 and
61 kJ/mol,
respectively; Ref. 310). This suggests lower endothermic contributions
from oxygenation-linked reactions in the Hb-poor specimens.
Hb-rich Daphnia produce more eggs containing threefold
higher Hb concentration (309), implying that the
advantages of hypoxic acclimation are passed on to the developmental
stages. Furthermore, O2 affinity of Hb isolated from eggs
of Hb-rich animals is much greater than that of the Hb from eggs
produced by Hb-poor animals (P50 = 2.9 and 7.2 Torr, respectively) (309). In Artemia, the
synthesis of Hb III is stimulated under hypoxia and inhibited under
high ambient O2 tensions (136a, 228). Because it shows the
highest O2 affinity and lowest pH and temperature effects
(see below), preferential synthesis of this component may favor aerobic
metabolism under hypoxia.
IV) O2 binding properties. The relatively high O2 affinities of cladoceran Hbs (P50 = 3.5 and 2.1 Torr, respectively) in Daphnia magna and Moina macrocopa at pH 7.2 and 20°C (513) suggest an O2 transporting function at low ambient tension. This is in accord with results of CO poisoning experiments that indicate a maximum role for D. magna Hb in O2 transport at ~30 mmHg (239) (Fig. 2). Four major Hb fractions of D. pulex, that may consist of at least 12 isoHbs with pI values of 5.0-6.5, show similarly high affinities (P50 = 1.4-2.7 Torr at pH 6.9, 20°C), no significant Bohr effects, and low cooperativity (n50 = 1.4-2.3) (673). The eggs of D. magna contain at least eight Hb components, including specific embryonic ones that have higher pI values than those in adults (309). Exposure to hypoxic conditions increases the proportion of Hb components with high pI values. An analysis of O2 equilibria in terms of Adair's model (310) suggests that a multiple Hb system that shows an inverse relation between Hb concentration and P50 as in Daphnia magna minimizes the total Hb concentration required for transporting O2 under a wide range of O2 tensions (308).
The Hb of Artemia displays distinct functional
heterogeneity; the three components, HbI (CC), HbII (CT), and HbIII
(TT), have different O2 affinities (P50 = 7.3, 5.1, and 2.6 Torr, respectively) and lower cooperativies
(n50 = 3.2, 3.3, and 1.4, respectively) than the hemolymph (n50 = 4.3)
(672) (Table 2, extracellular Hbs). HbII is the
most abundant component (64-91%), and HbI or HbIII is absent in
strains from some geographical regions (China and Brazil, respectively)
(671). The O2 affinity of Hb of
Artemia, which tolerates extremely high salinity, is
slightly decreased by Cl
and increased by CO2
at high pH, suggesting that CO2 is bound to free
NH2 groups as in mammalian Hbs (124). Hb II
obtained from Artemia populations living in lakes with high
levels of sulfate exhibits the same functional properties as that from
high Cl
salterns. Curiously, however, its O2
affinity is decreased by sulfate but not affected by high (1 M)
chloride concentration (123).
An interesting effect of assembly size was observed on the O2 binding properties of Artemia Hb fragments containing one, two, three, and four heme-binding domains obtained by partial proteolysis (672). The fragments had higher affinities (P50 = 0.7-1.5 Torr at 18°C and pH 7.5) than either the individual chains (P50 = 3.5 Torr) or the native Hb (P50 = 6.2 Torr) and exhibited a linear relationship between the mass and P50. Furthermore, moderate cooperativity (n50 = 1.7) was only observed with the native Hb.
The wide spectrum of oxygenation properties encountered in branchiopods
is illustrated by the exceptionally high O2 affinity of the
Hb from the conchostracan Cyzicus cf.
hierosolymitanus from high-altitude ponds that may
become hypoxic at night (P50 = 0.035 Torr and
n50 = 2.3) (22), the
intermediate affinities of the Hbs from the conchostracans,
Caenestheriella setosa and C. inopinata
(P50 = ~6 and n50 = 1.2-2.5) (115, 252), and the unusually low
affinities of the Hbs from the notostracans Lepidurus lynchi, L. couesi, and L. bilobatus
(P50 ~20 Torr at 20°C) that express substantial
cooperativity and a Bohr effect (n50 = 2,
=
0.2) (114, 115). Interestingly,
a 14- to 16-kDa fraction of Lepidurius bilobatus Hb obtained
by partial proteolysis lacked a Bohr effect and showed much higher
O2 affinity (P50 ~2 Torr) and higher
cooperativity (n50 = 3), indicating that
expression of cooperativity in the subunits is suppressed by their
association into the whole molecules (114). The
O2 affinity of the notostrachan Triops
longicaudatus Hb (P50 = 6.8 Torr, at
22°C, pH 7.1, n50 = 1.4-2;
=
0.23) is increased by Mg2+ and Ca2+
(238), as seen in extracellular annelid and gastropod Hbs
(see sect. III, C3 and C6).
B) OTHER CRUSTACEANS. Hb from the recently described copepod Benthoxymus speculifer living in association with the vestimentiferan, hydrothermal-vent tube-worm Ridgeia piscesae, is a 208-kDa protein composed of seven 14.3- and seven 15.2-kDa globins. In accordance with the highly variable environmental conditions that include extremely low O2 tensions and high CO2 and sulfide levels, the Hb exhibits a very high O2 affinity (P50 = 0.05 and 0.13 at 10 and 20°C) and lacks cooperativity and a Bohr effect (245).
Very little is known about the Hbs of the other crustacean classes (the Malacostraca, Ostracoda, and Cirripedia) (163, 541). The only malacostracan Hb known so far studied is that of the amphipod Cyamus scammoni, an obligatory ectosymbiont of the gray whale (540). It has a mass of 1,800 kDa and an unusual chevron-like appearance in electron micrographs (540, 541). The smallest subunit observed is 175 kDa, suggesting that the Hb is comprised of 10-domain polypeptide chains. Furthermore, a low heme-to-protein ratio indicates that not all domains bind heme or that some domains lose heme easily. Its low affinity (P50 = 14-24 Torr) appears to match the high loading tensions prevailing in well-oxygenated Pacific waters traversed by the whales (540).
Hb has been reported in a number of parasitic rhizocephalan cirripeds, including Septosacchus cuenotti (426) and Peltogaster curvatus and Parthenopea subterranea (161). The cirripedian barnacle Briarosaccus callosus, which parasitizes the king crab, has abundant Hb that appears to have masses >1,000 kDa and is physically heterogeneous (491, 564). It differs from branchiopod Hbs in having 17- to 19-kDa subunits when dissociated and has a very unusual springlike appearance in negatively stained electron micrographs, ~15 nm wide and 35-125 nm long (541). The structures and properties of ostracod Hbs have not been investigated.
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IV. INTRA- AND INTERSITE FUNCTIONAL DIFFERENTIATION |
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A. Role of Hb Heterogeneity
As evident from section III, B3, C1, and C7, invertebrates abundantly display Hb heterogeneity that involves both multiplicity (different isoHbs occurring in the same individual organisms) and polymorphism (different Hb components, Hb patterns, or relative concentrations occurring in different genetic strains). Whereas functionally different Hbs occurring in the same site implies intrasite heterogeneity, their occurrence in different juxtaposed sites provides a basis for intersite O2 transfer (362, 547, 644). The organismic advantages of heterogeneity are manyfold (632). Intrasite functional heterogeneity implies that the composite Hb functions in O2 transport, O2 storage, and facilitation of O2 diffusion over a greater range of O2 tensions than possible with a single Hb component. By permitting a division of labor between Hb components, it extends the range of conditions under which they can function and thus enlarges the organism's inhabitable environment (632). Hb multiplicity may alleviate the effects of mutational change, since deleterious effects in one gene would not affect the expression of other similar genes. Additionally, the implicit differentiation in isoelectric points may extend a protein's capacity for regulating free ion levels (448). The two cases of functional isoform multiplicity that have been the most comprehensively documented are the extracellula Chironomus Hbs (see sect. IIIC) and the Glycera RBC Hbs (see sect. IIIB3). Other explicit examples are the Hbs of Paramecium (263, 501), trematodes Gastrothylax and Explanatum (443), and Daphnia and Artemia (670, 673).
A related question is whether cytoplasmic and RBC isoHbs occur in the same cells and whether they interact in a functionally significant manner when they are in the same medium. Although the O2 affinities of individual G. dibranchiata RBCs show a normomodal distribution, indicating that both forms are in the same cells (359), there is little evidence for interactions between co-occurring components in invertebrate Hbs. In vitro mixing of the monomeric and polymeric Glycera dibranchiata Hb preparations whose O2 affinities differ by a factor of two results in an intermediate affinity (645), contrasting with an earlier observation that mixing low molecular and high molecular fractions produces a lower O2 affinity than either fraction (236). An interesting intramolecular functional differentiation given the much lower affinities of Chl than of annelid HBL Hb (see sect. IIIC3) appears in the polychaete Serpula, where hemes and chlorocruorohemes occur within the same or very similar HBL complexes (549).
B. O2 Transfer Systems
Compared with the simpler (Hb
Mb) O2 transfer
occurring in vertebrates, those identified in invertebrates appear to
show striking adaptive variation within the constraints imposed by the
anatomical and molecular structures. While the relative O2
affinities in annelids like Travisia pupa indicate a
vascular HBL Hb
coelomic RBC Hb
muscle Mb O2
transfer (366), the remarkable adaptability is illustrated
in the burrowing echiuroid Arynchite pugettensis where
O2 uptake occurs through the body wall and the
O2 affinities reveal a muscle Mb
coelomic Hb transfer
(366). Fascinatingly, the properties of Mbs from molluscs
with hemocyanin-rich hemolymph, like Siphonaria
(655), Aplysia and Dolabella, and
Buccinum undulatum reveal a Hc
Mb
O2 transfer, despite the low O2 affinity in
some molluscan Mbs (P50 = 13 Torr in
Buccinum Mb) (555).
In Amphitrite ornata, vascular (HBL Hb)
coelomic (RBC)
Hb transfer involves similar total amounts of both heme compounds and a
60-fold higher vascular than coelomic Hb concentration, which implies
that, at maximum exchange efficiency, only a small volume of blood
needs to perfuse the gills to oxygenate the voluminous coelomic fluid,
thus permitting a drastic restriction of gill size (642).
Curiously, the coelomic monomeric Hb from the hydrothermal-vent polychæte Alvinella shows very similar, pH-dependent
O2 affinities as in the HBL vascular Hb. This indicates a
bidirectional O2 transfer between the two Hbs in the
perioesophageal pouch that maintains oxygenation of the brain
(242). The occurrence of marked cooperativities (n = 2-3) in the coelomic Hb under the same pH and
temperature conditions where the Bohr effects are pronounced suggests
the implication of deoxygenation-linked aggregation.
Despite a physical separation, polychaete coelomic and circulatory compartments are in close contact (suggesting that the coelomic fluid is an ultrafiltrate of blood) (398). The occurrence of apparently identical HBL Hb molecules in the vascular and the coelomic fluids of Nepthys hombergii (273, 626) indicates that the barrier is not absolute in this species.
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V. OTHER FUNCTIONS, REACTIONS, AND ACTIVITIES |
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Apart from its roles in O2 binding (transport, storage, and scavenging of O2), protecting microorganisms from NO, and use of NO to control levels of O2 in nematodes such as Ascaris discussed above, Hbs may be involved in a number of other functions and reactions, that may be integrally linked with its O2 binding reactions (e.g., acid-base regulation and sulfide binding).
A. Acid-Base Balance
Hbs occurring at high concentrations may play an important part in body fluid acid-base balance (578) that is intimately linked with their gas-binding properties. Hbs, which are the main proteins in invertebrate body fluids, buffer H+ from carbonic acid, allowing formation of bicarbonate ions. Due to (negative) linkage between O2 and proton binding, Hbs with normal Bohr effects will moreover transport protons from acid tissues to the respiratory surfaces. Marked Haldane effects (higher bicarbonate levels and pH values in deoxy than in oxy blood that are a direct consequence of Bohr effects) have been demonstrated in invertebrates with extracellular Hbs, including those in Arenicola marina (575, 576), Neoamphitrites figulus (654), and the giant Gibbsland earthworm Megascolides australis (634). In intertidal Arenicola, the transient acidosis that follows Hb oxygenation upon high-tide immersion is dampened by oxygenation-dependent buffering by the Hb, which is maximum at pH 7.48 and may result from the unmasking of an imidazole group (578).
The role of RBC Hbs in acid-base balance appears not to have been studied in invertebrates but is implicit in the greater buffering capacity of "true plasma" (the plasma that contains suspended RBCs) relative to RBC-free plasma in mammals (133).
B. Reactions With Sulfide
In contrast to vertebrate Hbs and Mbs that react with sulfide to form covalently modified heme groups of the green sulfoHb and sulfoMb (81), invertebrate Hbs and Mbs react with sulfide in several different ways, without concomitant covalent modification of the heme group.
1. Extracellular Hbs
The earliest reaction observed was the oxidation of sulfide by the vascular, extracellular HBL Hb of the marine polychaete Arenicola, resulting in the formation of hematin (ferriheme hydroxide) (422, 423). However, in the case of the closely related Abarenicola Hb, no reaction with sulfide was observed and the O2 binding affinity of the Hb remained unaltered (653).
The elucidation of additional reactions of invertebrate Hbs with
sulfide has come about mostly as the result of the discovery of
symbioses of invertebrates with sulfur-oxidizing chemoautotrophic prokaryotes, which coincided with the discovery in 1977 of hydrothermal vents occurring at isolated sites on the ocean floor at depths of up to
~2,500 m and an associated thriving fauna including deep-sea vestimentiferan tube worms (e.g., Riftia and
Lamellibrachia), polychaetes (Alvinella), and
vesicomycid clams (e.g., Calyptogena) (590).
Since then, symbioses have been found in diverse sulfide-rich habitats, ranging from deep-sea cold seeps to seagrass beds and sewage outfalls; the symbionts fix carbon from the oceanic
CO2 and supply most of the organic carbon required by the
host (88, 158, 400). Adult
vestimentiferans do not have a digestive tract, and the
sulfide-oxidizing, prokaryote endosymbionts on which they depend
for supplying their nutritional requirements are localized within a
highly vascularized organ (trophosome) located within the trunk of the
tube worm (579). The trophosome comprises up to
one-third of the host and is surrounded by noncirculating coelomic fluid containing the ~400-kDa Hb C1, in equilibrium with the
circulating vascular blood, containing the HBL HbV1 and another
~400-kDa Hb V2 (559, 577) (see sect.
IIIC3). The host supplies the symbiont with
inorganic carbon, O2, sulfide, and nitrate. It is
significant that sulfide and O2 have to be segregated to
avoid spontaneous sulfide oxidation (479). Sulfide
acquisition occurs via HS
rather than via
H2S, and that of inorganic carbon occurs via diffusion of
CO2 rather than via bicarbonate transport
(196, 197). The coelomic fluid and, to a
lesser extent the blood of Riftia, is characterized by a
pronounced base excess that permits retention and storage of large
quantities of CO2, up to 50 mM, compared with 7.5 mM in
Arenicola. However, unlike Arenicola, only a
small fraction of the total CO2 appears to be associated with the Hb (580). In addition to binding O2
with high affinity (28), Riftia Hbs
share the ability to bind sulfide reversibly and independently of
O2 (27). The amino acid sequence of a globin chain common to all three Hbs has revealed a free Cys residue (692), which is able to bind sulfide (690).
In addition, the Cys residues present in the linker chains of Hb V1 are
able to combine with sulfide to form persulfides, thus accounting for the much higher sulfide-binding capacity of Hb V1 relative to Hb V2
and Hb C1. Free Cys residues have also been found in the globin chains
of the HBL Hbs of the vestimentiferan Lamellibrachia (528) and the polychaetes Alvinella
(686) and Arenicola (687), which
inhabit sulfide-rich environments.
The terebellid polychaete Alvinella living in organic tubes on active sulfide chimneys walls at hydrothermal vent sites (134) is called the "Pompeii worm" in reference to its existence under a constant precipitation of mineral particles at temperatures higher than any other known metazoan (mean in situ ambient temperatures of 68°C with spikes up to 105°C!) (76). In contrast to vestimentiferans, the alvinellids have a gut and no endocellular prokaryotic symbionts. However, they exist in obligate association with epibiotic bacteria (134). Alvinella has a coelomic intracellular Hb in addition to its vascular HBL Hb (278). One or both of these Hbs may participate in the detoxification of sulfide, either by binding it and transporting it to the epibionts asssociated with the surface of the worm or by direct reaction with sulfide (134). Although both Hbs were reported not to bind sulfide (371), it is not absolutely clear that this point has been resolved (134).
The pogonophorans, e.g., Siboglinum and Oligobrachia, which occur in marine sediments at depths of up to ~2,000 m and appear to be closely related to vestimentiferans and annelids, also contain symbiotic autotrophic bacteria (506). However, nothing appears to be known about the reactions of pogonophoran Hbs with sulfide. The cDNA sequences of three of the eight globin chains of Oligobrachia have a 35-52% identity with the globin chains of the oligochaetes Lumbricus and Tylorrhynchus HBL Hbs and the vestimentiferans Riftia and Lamellibrachia (683). Like the latter, but not the former, they have two free Cys residues, which may be involved in sulfide binding. Two interesting and related points are the presence of the ~400-kDa Hbs in vestimentiferans and the absence of an HBL Hb in the pogonophorans. Because the subunit and quaternary structures of Riftia HBL Hb V1 (130, 688, 689) are very similar to those of the leech Macrobdella Hb (127, 290, 641) and all three of Riftia Hbs share common globin chains, it appears logical to consider the smaller Hbs in both Riftia and Oligobrachia to be dimers of globin chain dodecamer subassemblies. If this is the case, then one can view the vestimentiferan HBL Hb as a means of increasing the sulfide-binding capacity of the vestimentiferan blood, a property not required by the much smaller pogonophorans.
2. Cytoplasmic Hbs
O2 and sulfide binding coexist in Hbs from symbiont-harboring gills of the clams Solemya and Lucina (321, 324). The sulfide binding Hbs exist in an oxy form, which is partly converted to a ferric sulfide derivative (146, 324). This differs from those cases described in the preceding section, where the sulfide is bound to free Cys residues on globin and linker chains and heme is not involved. The sulfide reactive Hb may facilitate diffusion of sulfide through the cytoplasm to provide the symbiont with the neccessary supply (664, 666).
An intriguing adaptive differentiation appears in the
symbiont-harboring Puerto Rican clam Lucina pectinata
whose gill Hb consists of three components: the sulfide reactive
monomeric HbI and O2-reactive Hbs II and III which remain
oxygenated in the presence of H2S and self-associate in
a concentration-dependent manner to tetramers when mixed
(324, 325). Although the three Hbs have
similar, high O2 affinities (P50 ~0.1-0.2
Torr at 20°C), HbI has a high affinity for sulfide
(KD ~3.4 nM) and a slow dissociation rate
(koff = 0.00022 s
1),
indicating that sulfide delivery by simple dissociation is unlikely. A
possible mechanism could be the reduction of the ferric sulfide
derivative near the bacterial surface leading to the ferrous Hb and
rapid dissociation of sulfide (664). The amino acid
sequences of O2-reactive HBII and HbIII that form a
noncooperative tetramer are known (234, 235).
Because of slow O2 dissociation rates, these components may
not deliver sufficient O2 and may function as a terminal
oxidase by accepting electrons from the symbiont (664).
The crystal structures of the aquomet and sulfide-bound forms of
HbI have been determined (452, 453). The
unique sulfide binding property appears to be predicated on an unusual
distal heme cavity environment, wherein an E7Gln is surrounded by
B10Tyr and E11Phe. Although the corresponding triple mutant of sperm whale Mb was found to have a ~700-fold higher sulfide binding activity than wild-type Mb, its activity was still
approximately sevenfold lower than Lucina HbI. Comparison of
the crystal structures indicates that the higher affinity of HbI could
be due to a significantly larger ligand-binding site than in the
mutant, which thus is able to better accommodate the large ligand
(401). Detailed spectroscopic studies by
López-Garriga and collaborators (79,
347, 399, 497) have indicated
that there may be in addition, a unique orientation of the heme 2-vinyl
groups stabilizing the heme Fe(III) state and that the lack of hydrogen
bonding of the heme propionates to the polypeptide chain may provide
the heme group with a rocking freedom that facilitates sulfide binding
and that ligand stabilization occurs via interactions with the B10Phe
and E11Phe. A detailed comparison of the spectroscopic properties of
Ascaris perienteric Hb and Lucina HbI has
suggested that the much higher O2 affinity of the former is
due to a strong hydrogen bonding network between the bound
O2, E7Gln and B10Tyr, forming a tight cage for the bound ligand. In Lucina HbI, this hydrogen bonding network is more
tenuous, and the distal cavity is more accessible to large ligands than in Ascaris Hb (431).
Yet another effect of sulfide occurs in the case of the Solemya
reidi cytoplasmic Hbs (146), which have high
O2 binding affinities (P50 ~0.3-0.5 Torr)
and comparable O2 dissociation rates (~10 s
1) (321). Although there does not appear to
be any alteration in the optical absorption spectra of the Hbs in the
presence of sulfide, the O2 dissociation rates of two of
the three Hbs decrease by 5- to 15-fold in the presence of 600 µM
HS
(equivalent to PH2S = 0.43 Torr). The
physiological function of such an effect would be the conservation of
the intracellular O2 store with increase in sulfide
concentration and/or a decrease in the O2 level
(321).
The deep-sea vesicomycid clams, e.g., Calyptogena, have large symbiont-harboring gills and voluminous blood, which can account for 13-22 and 24-44% of total body weight, respectively (400). The host supplies the symbiont with inorganic carbon, O2, hydrogen sulfide, and nitrate; in particular, O2 and sulfide have to be segregated to avoid spontaneous sulfide oxidation (479). A cytoplasmic Hb is present in the gill at concentrations of up to 250 µmol/kg wet wt (663), and the blood contains intraerythrocytic dimeric and tetrameric Hbs of moderate O2 affinity (P50 ~7.6 Torr) (89, 90, 560). The sequence of the dimeric Hb has been determined (527). Given that a Zn-containing, large-molecular-weight serum protein was shown to bind and transport sulfide in this species (90), the role of the Hbs remains unclear. The dimeric Hb is similar to the cytoplasmic Hbs of the lucinid clam Myrtea, which bind O2 cooperatively but do not bind sulfide; the latter role is performed by a nonHb protein in the gill (113). Thus vent bivalve Hb may serve to transport or store O2 (559), as demonstrated in a nonvent bivalve (124a).
C. Autoxidation and Hemichrome Formation
The autoxidation of the ferrous form of O2 binding heme proteins is an important measure of their stability in the performance of their function (508). This topic is only a part of the extensive subject dealing with oxidation of Fe(II) complexes (see Chem Rev 94, issue 3: "Metal-Dioxygen Complexes," 1994). The autoxidation of mutant mammalian Mbs has been extensively investigated by Olson, Phillips, Jr, and collaborators (61, 75, 508). Mutation of the distal E7(64)His has been shown to result in dramatic increases in the autoxidation rate in the pH range 5-9 in the order Val > Gly > Leu > Gln > His (wild type). The fact that the Mb of the prosobranch mollusc Cerithidea, which has a distal His (535), has an autoxidation rate similar to that of the Mb from the opisthobranch mollusc Aplysia, which has a Val (51), underscores the difficulty of explaining the properties of invertebrate Hbs and Mbs based on mutagenesis of vertebrate Mb. The autoxidation reactions of vertebrate and nonvertebrate Hbs and Mbs have been reviewed recently by Shikama (488). In the case of Mbs, the autoxidation rate can vary by two orders of magnitude. Comparison of autoxidation rates found in the literature for nonvertebrate globins is complicated by differences in the experimental methods used to determine them. Two types of mechanisms have been considered in the autoxidation of oxygenated ferrous heme proteins: 1) electron transfer from Fe(II) to the bound O2, followed by dissociation of the protonated superoxide into the oxidized protein and free superoxide radical, and 2) a bimolecular reaction between noncoordinated O2 and either a pentacoordinated or a hexacoordinated deoxyheme, the sixth group in the latter case being a water molecule or a ferric anionic ligand such as azide, fluoride, or chloride. In Mb and its mutants still having the distal His, autoxidation occurs via a combination of superoxide dissociation and the bimolecular reaction between O2 and deoxyMb containing a weakly coordinated water molecule (61). The introduction of bulky hydrophobic residues at positions E11 and B10 decreases accessibility of the Fe to solvent water molecules and reduces autoxidation rates by up to 10-fold (75). A recent study of the autoxidation of Rhizobium FixL and Aplysia Mb, both of which are known to have a pentacoordinate ferric form, has shown that they autoxidize primarily via the bimolecular reaction of O2 with an intermediate having water coordinated to the heme Fe(II), indicating that a hexacoordinate aquomet species is not required (202).
A number of nonvertebrate Hbs and Mbs exhibit the unusual formation of a hemichrome at alkaline pH instead of the usual hydroxy-Met form upon autoxidation. This was found for Paramecium Hb (588), the intracellular Hb from the sea cucumber Caudina (390), and the extracellular Hbs from the earthworms Octalasium (32) and Glossoscolex (4). The formation of a hemichrome instead of a Met form upon oxidation also occurs in the case of LegHbs (19). A recent crystallographic study (222a) shows that the active site of ferric rice HbI differs significantly from those of other hemoglobins in that the proximal and distal His residues coordinate directly to the heme iron, forming a hemichrome with spectral properties similar to those of cytochrome b5. Hemochrome formation at alkaline pH has been observed in the case of the extracellular HBL Hb from Arenicola (281, 282). The oxygenated Cerithidea Mb exists as homodimers in solution and upon oxidation forms a monomeric hemichrome over the pH range 5-11 instead of the usual MetMb (372). This reaction is reversible in Cerithidea Mb, unlike the case with Paramecium Hb (588). It has been suggested that the formation of hemo- and hemichromes could have a functional role (4, 390, 588). In humans, hemichrome formation appears to favor the formation of Heinz bodies and the subsequent destruction of RBCs (447).
A recent report of spontaneous hemin release from Lumbricus
Hb (503) purports to provide evidence for facile heme
loss. Measurements of the rate of hemin loss from completely oxidized
human HbA, Lumbricus Hb, soybean LegHb and horseradish
peroxidase C in the presence of apoMb provided the following rate
constants: 7.7, 19, 7.1, and 0.24 × 103
min
1, respectively. Since no evidence of heme loss
from the native Lumbricus oxyHb was provided, the
~2.5-fold higher rate of hemin loss from Lumbricus metHb
relative to HbA appears to be of very little if any relevance to the
stability of the native oxyform. The autoxidation of
Lumbricus oxyHb is a very slow process whose rate is
~0.01/h at pH 7 and 20°C (697), and the dissociation of the met form is known to be very slow (484). Riggs and
collaborators (697) have concluded that
"Lumbricus Hb is at least as stable as human Hb tetramers
or dimers." These observations emphasize that the so-called
facile heme loss from the Met form to apoMb (503) has
little if any relevance to the stability of native Lumbricus
oxyHb.
D. Minor Activities and Specialized Functions
1. Oxidase and peroxidase-like activities
Human Hb is known to exhibit monooxygenase activity characteristic
of cytochrome P-450, as exemplified by the catalysis of aniline p-hydroxylation (384). The
monooxygenase activity appears to be confined primarily to the
Lebioda and collaborators (337, 340) have
recently isolated a dehaloperoxidase from the marine polychaete
Amphitrite ornata: its amino acid sequence and its crystal
structure show it to have the typical Mb fold. Although the complete
sequence showed greatest similarity with Aplysia Mb, the
identity among 126 overlapping amino acids was only ~21%, which is
among the lowest in nonvertebrate globins known to have Mb folds from
crystal structure. This globinlike dehaloperoxidase serves primarily to
dehalogenate the repellant bromophenols generated by marine polychaetes
such as Thelepus crispus and Notomastus lobatus,
which cohabit and compete with Amphitrite in estuarian
mudflats (337, 340). 2. Superoxide dismutase activity
The extracellular Hb from Lumbricus has superoxide
dismutase (SOD) activity (346), in agreement with the
known presence of Cu(II) and Zn(II) (509). Because no SOD
activity was found in the globin moiety of the Hb consisting of the
dodecamer subassembly, it is likely to reside in one or more of the
nonglobin linker subunits. Although the SOD activity of the Hb is
~10% of the mammalian Cu,Zn SOD activity, given that there are four
different linkers subunits, none of which contribute >10% of the
total mass, it is likely that the activity of the isolated linker(s) is
comparable to the mammalian enzyme. 3. Vitellogenin-like function
A possible function as a vitellogenin is indicated by the uptake
of Hb by the oocytes from the hemolymph of the dipteran insect Chironomus thummi (584). A sex-influenced,
~35-kDa dimeric protein present in large amounts in chironomid
females, but not in males, has been identified provisionally as a Hb
(154) and may function both in respiration as well as an
egg storage protein (83). 4. Buoyancy regulation
The insect backswimmers Anisops and Buena
are two hemipteran genera that synthesize Hb in both the larval
and adult forms (40). As indicated in sections
IIC4 and IIIA9, the low
O2 affinity of the Hb that is concentrated in abdominal
tracheal cells permits unloading of O2 into the tracheal
system to regulate the insect buoyancy (385,
386, 652). 5. Oxygen sensing
The best-documented case of an O2-sensing heme
protein is FixL, a homodimer of two polypeptide chains each comprising
an NH2-terminal heme-binding domain and a
COOH-terminal histidine kinase domain (193-195). The
sensing of low O2 concentration by FixL and its
transduction by FixJ, the response regulator protein, are required for
the expression of the nif and fix genes for
nitrogen fixation by the soil bacterium Rhizobium meliloti
associated with root nodules formed in its plant host Medicago
sativa (alfalfa). The phosphorylating ability of the kinase domain
of FixL is dependent on the spin state of the heme Fe in the other
moiety: high-spin but not the low-spin forms are active kinases
(194). Because the binding of O2 to ferrous
FixL converts it to a low-spin state, FixL may function as a sensor
for other ligands, such as NO or CO. The heme-binding domain of
FixL has an amino acid sequence, which cannot be easily aligned with
Hbs and Mbs. Although its O2 and CO dissociation rates are
comparable to those of Mbs, the very slow association rates account for
its 30- to >100-fold reduced affinities for these ligands
(195). Gilles-Gonzalez and collaborators (201) have obtained the crystal structures of a
high-spin Met form and a low-spin cyanomet form of a monomeric
Bradyrhizobium FixL domain. Unlike the Hbs and Mbs, it
consists of a helix and a five-stranded antiparallel In addition to the O2 sensing heme protein FixL and the
O2 sensors for the eukaryotic hypoxic response, other
nonglobin heme proteins that sense NO (guanylate cyclase) and CO
(Rhodospirillum CooA) are under active investigation
(65, 456). While the present manuscript was under review, Alam and collaborators
(240) have described a new class of
O2-sensing, heme protein aerotaxis transducers in the
archeon Halobacterium salinarum and the bacterium
Bacillus subtilis. These are ~50-kDa chimeric proteins
comprising an NH2-terminal globin domain which exhibits ~14% identity with sperm whale Mb and has the invariant CD1Phe and
F8His as well the complete pattern of hydrophobic residues characteristic of the eight helical segments in Mb. It is thought that
O2 binding leads to conformational alterations triggering a
conformational change in the COOH-terminal signaling domain. 6. Baterial glutamate racemase
The glutamate racemase from the bacterium Pediococcus
pentosaceus represents a unique and curious case: it is a
265-residue protein whose sequence comprises a stretch of 92 residues
(92-183), of which 27 are common to bovine Mb
(91). The high sequence similarity in the regions
corresponding to the E and F helices, which form the heme-binding
cavity, explains the formation of a 1:1 complex with hemin, leading to
loss of racemase activity. Although the aspartate racemase sequence
(681) is similar to the glutamate racemase, it has less
similarity to the Mb and does not bind heme.
-subunits. The same activity is displayed by the extracellular Hb
from Lumbricus (J. Mieyal, personal communication). The
oxidase activities of cytoplasmic Hbs have been discussed by Wittenberg
et al. (664, 668).
-sheet with
a hydrophobic distal cavity. Comparison of its heme cavity structure
with that of the polychaete Glycera Hb (23)
reveals a surprising similarity in the positions of the distal Leu and
Ile with the annelid E7Leu and E11Val residues. In addition, another
hydrophobic group Ile215 is close enough to interact with bound
ligands. In contrast to Hbs and Mbs, the small hydrophobic distal
cavity in FixL does not have any polar side-chain groups capable of
hydrogen bonding with bound ligands.
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VI. CONCLUDING REMARKS |
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Present-day globins that are presumed to have descended from a single ancestral globin reveal a spectacular diversity in structure and function that often is manifested within individual categories of cytoplasmic, RBC, and extracellular nonvertrebrate Hbs. The divergence, which is seen interspecifically as well as in multiple Hbs within the same individual organisms, correlates with wide variation in the physicochemical conditions under which the globins operate in vivo and may represent a greater shift of the regulatory burden toward the molecular level than in vertebrates, which may compensate for a lesser development of nonvertebrates at the organ level (630).
Mangum (356) has recently argued that the evolutionary history of the oxygen carrier proteins among invertebrates is not as capricious as it appears superficially. Cytoplasmic Hbs that are commonly monomeric or dimeric and show no or little cooperativity exhibit a 4,000-fold variation in P50 (from 0.01 to 40 Torr). This variation may be important to their roles in the storage of O2 and the facilitation of its diffusion (when at high concentration) and may allow them to serve in Hb-mediated oxidative phosphorylation (when at low concentration) (cf. Ref. 664). The intracellular RBC Hbs, which have fairly similar physiological properties, exhibit only limited pH sensitivity and no significant sensitivity to ions and intracellular organic modulators, are generally associated with simple circulatory systems, such as the open coelomic circulation in marine invertebrates and appear broadly to serve intersite O2 distribution. The O2 content of RBC Hbs can sustain reduced levels of metabolism in aquatic invertebrates during ventilatory pauses in intertidal species during low-tide emersion. The low cooperativities of these Hbs imply release of O2 over a wider span of in situ O2 tensions than in Hbs with high cooperativity. With the monomeric chironomid Hbs as a prominent exception, the extracellular Hbs are commonly complex multimeric structures that function as O2 carriers in open and closed circulatory systems with primitive heart function. They exhibit large variations in homotropic interactions (n = 1-9) and heterotropic ones (effects of pH and divalent cations) even in closely related species. Exceptions to these generalizations "confirm the rule" in that they generally correlate with specific, identifiable exogenous (environmental) conditions or endogenous factors (e.g., habit, ventilation pattern, anaerobiotic capability, excretory organ type, etc.).
In contrast to the divergences, the occurrence of similar functional properties in different categories of Hbs and in Hbs of phylogenetically diverse organisms reveal repeated instances of adaptive and evolutionary convergences in O2 binding properties. Thus Hbs from some 23 unrelated plant families achieve extraordinary high O2 affinity through high O2 association and low dissociation rates. In contrast, the low O2 affinities of cytoplasmic Hbs in three animal phyla are achieved by radically different mechanisms, suggesting that when the need arose for special functional properties, the necessary molecular mechanisms were evolved.
Although the ability of large organisms to survive and thrive may depend critically on Hbs, it should be borne in mind that the functional properties of these proteins are only part of a symphony of mutually complementary adaptations manifested at organismic, cellular, and molecular levels, each of which may become critically implicated under extreme conditions. Thus, apart from possessing Hb with specific O2 binding characteristics, the adaptations securing tissue oxygenation in the annelid Alvinella from high temperature hydrothermal vent habitats include highly developed gills with large specific surfaces and small diffusion distances for O2 and a branchial circulatory system whose complexity parallels that observed in fish gills (276, 581).
Whereas studies of structural and molecular properties of nonvertebrate Hbs have advanced tremendously in the last decade as a result of the deployment of an arsenal of newly available techniques (site-directed mutagenesis and cloning, X-ray crystallography, mass spectrometry, cryoelectron microscopy), our understanding of the physiological significance of Hbs appears to have lagged behind, commonly through lack of information on in vivo conditions (of O2 tension, pH, and ion levels) and technical difficulties associated with their experimental assessment in small and delicate animals. Additionally, the often observed differences in the functional properties of Hbs in situ and in vitro, which may reflect changes in quaternary structure or loss of effectors, suggests caution in attributing organismic functions to Hbs on the basis of in vitro studies of isolated Hbs.
The recent findings of a human neuroglobin (65b), of simple globins in the insect Drosophila (65a) and in the bacteria whose genomes have been determined (434a), of truncated Hbs in a substantial number of bacterial groups (430a), of chimeric globins in bacteria and archea (240) and the apparently widespread occurrence of plant symbiotic and nonsymbiotic globins (9, 583), including a globin in moss (31a), indicate that globins occur much more widely among nonvertebrates than hitherto suspected. This raises the possibility that Hbs may be ubiquitous and that their apparent absence may be due simply to very low levels of expression, as exemplified by nonsymbiotic plant Hbs (9) and the Hbs from the nematode Caenorhabditis (302, 364) and the insect Drosophila (65a).
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ACKNOWLEDGMENTS |
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We acknowledge with considerable indebtedness Drs. C. Appleby and J. Wittenberg for their critical reading of portions of the manuscript. Furthermore, we emphasize the invaluable contributions of the two referees who had to wade valiantly through our turgid prose and who provided us with a number of important corrections and suggestions, which have been incorporated into the final version of this review.
Research in the authors' laboratories was supported by the Danish Natural Science Research Council, the Danish Center for Respiratory Adaptation, and the National Institutes of Health of the United States Department of Health and Human Services.
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FOOTNOTES |
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Address for reprint requests and other correspondence: R. E. Weber, Zoophysiology Department, Univ. of Aarhus, CF Moellers Alle 131, Universitetsparken, DK-8000 Aarhus, Denmark (E-mail: roy.weber{at}biology.au.dk).
1 In this review the O2 binding affinities of Hbs are denoted as "low," "moderate," "high," "very high," and "extremely high" to indicate P50 >20, 10-20, 1-10, 0.1-1, and <0.1 Torr, respectively.
2 The anionic organic phosphates are 2,3-diphosphoglycerate (DPG) in mammals, inositol pentaphosphate (IPP) in birds, and ATP and GTP in ectothermic vertebrates.
3 Because diffusional transfer in tissues is extremely slow (>300,000 times slower than in air) (332), aerobic organisms that exceed 1 mm in thickness or body radius require respiratory proteins for transport or facilitated diffusion of O2.
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